Locus 8033

Sequence ID X_DroMel_CAF1
Location 19,964,716 – 19,964,809
Length 93
Max. P 0.556267
window13182

overview

Window 2

Location 19,964,716 – 19,964,809
Length 93
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 66.82
Mean single sequence MFE -24.50
Consensus MFE -16.54
Energy contribution -18.10
Covariance contribution 1.56
Combinations/Pair 1.32
Mean z-score -0.95
Structure conservation index 0.68
SVM decision value 0.05
SVM RNA-class probability 0.556267
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19964716 93 - 22224390
CGACACC----------------CCACUCAACUGGUUUCGACGGACAUUGGCUCGACAAGUGCACUACUAGCCUUCUUUCGGGCCUUCCGACGAUCCGCUGCUCAGCAU-
.......----------------..........((..(((.((((....(((((((.(((.((.......)))))...))))))).)))).))).))(((....)))..- ( -27.40)
>DroSec_CAF1 77056 105 - 1
CGACACC---CCC--CCCCCCCCCCAUUCAAUUGGUUUCGACGGACGUUUGCUCGACAAGUGCACUACUAGCCUUCUUUCGGGCCUUCCGACGAUCCGCUGCUGAGUAUU
.......---...--..........(((((..(((..(((.((((.(...((((((.(((.((.......)))))...))))))).)))).))).)))....)))))... ( -22.30)
>DroYak_CAF1 70926 108 - 1
CGACUCCACACUC--CUCACUCCCCACACAACUGGUUUCGACGGCAUUUGGCUCGACAAGUGCACUACUAGCCUUCUUUCGGGUCUUCCGUCGAUCCGCUGCUCAGUAUU
.............--...............((((((.(((((((.....(((((((.(((.((.......)))))...)))))))..)))))))......)).))))... ( -26.10)
>DroPer_CAF1 85593 102 - 1
UAUCUC----UUUCUCUUUCUUUUCUCUGAACUGGUUUAAAUGGAUUUUUCUCUGGCGGGUGCACUACUAGCCUU----GGGAUCUCCCGUCCACCGCCUGGCCAUCGGU
......----................((((..(((((....(((((........(((.((((...)))).)))..----(((....))))))))......))))))))). ( -22.20)
>consensus
CGACACC___CUC__CUC_CUCCCCACUCAACUGGUUUCGACGGACUUUGGCUCGACAAGUGCACUACUAGCCUUCUUUCGGGCCUUCCGACGAUCCGCUGCUCAGCAUU
.................................((..((((((((....(((((((.(((.((.......)))))...))))))).)))))))).))............. (-16.54 = -18.10 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:42 2006