Locus 8032

Sequence ID X_DroMel_CAF1
Location 19,963,330 – 19,963,435
Length 105
Max. P 0.703117
window13181

overview

Window 1

Location 19,963,330 – 19,963,435
Length 105
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 89.97
Mean single sequence MFE -29.65
Consensus MFE -24.70
Energy contribution -26.45
Covariance contribution 1.75
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.83
SVM decision value 0.36
SVM RNA-class probability 0.703117
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19963330 105 + 22224390
CUUAAGCAAGCUCGACUGUAGGCGGAAGCAGAG---AAGGCUGAAAACUCAAUUCGGCCCCAAACGAUGUGAGCCACUGUGACAGCCACAAUUCAAACAGUUUGGCAA
.........(((.((((((..((....))...(---(((((((((.......)))))))........((((.((..........)))))).)))..)))))).))).. ( -30.70)
>DroSec_CAF1 75943 108 + 1
CUUAAGCAGUCUGGACUGUAGGCGGAAGCAGAGACGAAGGCUGAAAACUCAAUUCGGCCCCAAACGAUGUGAGCCACUGUCACAGCCACAAUUCAAACAGUUUGGCAA
........(.(..((((((..((....))......((((((((((.......)))))))........((((.((..........)))))).)))..))))))..)).. ( -30.10)
>DroEre_CAF1 61800 104 + 1
CUUAGGGCAGCUCCACUGUAGGCGGAAGCACAG---AAGGCACAAAACUGAAUUCAGCCCCA-ACGAUGUGAGCCACUGUCACAGCCACAAUUCAAACAGUUUGGCAA
....((((.(((...((((..((....))))))---..))).......((....))))))..-....(((((.......)))))((((.((((.....)))))))).. ( -26.70)
>DroYak_CAF1 64825 104 + 1
UUUAAGGAAGCUGGACUGUAGGCGGAAGCACUG---AAAGCUGAAAACUCAAUUCGGCCCCA-ACGAUGUGAGCCACUGUCACAGCCACAAUUCAAACAGUUUGGCAA
.........((..((((((..((....))..((---((.((((((.......))))))....-....((((.((..........)))))).)))).))))))..)).. ( -31.10)
>consensus
CUUAAGCAAGCUCGACUGUAGGCGGAAGCACAG___AAGGCUGAAAACUCAAUUCGGCCCCA_ACGAUGUGAGCCACUGUCACAGCCACAAUUCAAACAGUUUGGCAA
.........((((((((((..((....)).........(((((((.......)))))))........((((.((..........))))))......)))))))))).. (-24.70 = -26.45 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:41 2006