Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,242,439 – 2,242,531 |
Length | 92 |
Max. P | 0.550071 |
Location | 2,242,439 – 2,242,531 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 94.33 |
Mean single sequence MFE | -25.77 |
Consensus MFE | -24.10 |
Energy contribution | -24.43 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.56 |
Structure conservation index | 0.94 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2242439 92 - 22224390 CCGAAGGACACCAGAAGAAUGGGAAA--AAAACGAAACCAGAUCGGAAGCCGCGUCGCUCUGAUCCCCUUGUUUGGCAGCCAGCUGCCAAGGAC-- ((.((((...(((......)))....--............(((((((.((......))))))))).))))..(((((((....)))))))))..-- ( -29.50) >DroSec_CAF1 5419 90 - 1 CCGAAGGACACCAGAAGAAUGGGAAA--AAAACGAAACCAGAUCGGAAGCC--GUCGCUCUGAUCCCCUUGUUUGGCAACCAGCUGCCAAGGAC-- ((.((((...(((......)))....--............(((((((.((.--...))))))))).))))..((((((......))))))))..-- ( -25.50) >DroEre_CAF1 5634 94 - 1 CCGAAGGACACCAGAAGAAUGGGAAAAAAAAACGAAACCAGAUCGAAAGCC--GUCGCUCUGAUCCCCUUGUUUGGCAACCAGCUGCCAAGGACCA ((.((((...(((......)))................((((.(((.....--.))).))))....))))..((((((......)))))))).... ( -22.30) >consensus CCGAAGGACACCAGAAGAAUGGGAAA__AAAACGAAACCAGAUCGGAAGCC__GUCGCUCUGAUCCCCUUGUUUGGCAACCAGCUGCCAAGGAC__ ((.((((...(((......)))..................(((((((.((......))))))))).))))..((((((......)))))))).... (-24.10 = -24.43 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:10 2006