Locus 8029

Sequence ID X_DroMel_CAF1
Location 19,954,558 – 19,954,676
Length 118
Max. P 0.891061
window13177

overview

Window 7

Location 19,954,558 – 19,954,676
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 98.31
Mean single sequence MFE -29.62
Consensus MFE -27.52
Energy contribution -27.92
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.93
SVM decision value 0.96
SVM RNA-class probability 0.891061
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19954558 118 - 22224390
GAAGAA-AACAGGUGGAAAAAUACGGCAAAGAAACAAUUUCUGUUGUGCUUAACUUGUUGAUGGCCGGGAGAAACAUUUUGUCAGUGGCAAAAGUUUCAUUUCAUUCCUUCUUUUUCCU
...(((-((.(((.((((.....((((.....(((((.....((((....)))))))))....))))...(((((.((((((.....)))))))))))......)))).)))))))).. ( -29.00)
>DroSec_CAF1 67062 118 - 1
GAAGAA-AACAGGUGGAAAAAUACGGCAAAGAAACAAUUUCUGUUGUGCUUAACUUGUUGAUGGCCGGGAGAAACAUUUUGUCAGUGGCAAAAGUUUCAUUUCUUUCCUUCUUUUUCCU
...(((-((.(((.(((((....((((.....(((((.....((((....)))))))))....))))...(((((.((((((.....))))))))))).....))))).)))))))).. ( -29.70)
>DroSim_CAF1 56444 118 - 1
GAAGAA-AACAGGUGGAAAAAUACGGCAAAGAAACAAUUUCUGUUGUGCUUAACUUGUUGAUGGCCGGGAGAAACAUUUUGUCAGUGGCAAAAGUUUCAUUUCUUUCCUUCUUUUUCCU
...(((-((.(((.(((((....((((.....(((((.....((((....)))))))))....))))...(((((.((((((.....))))))))))).....))))).)))))))).. ( -29.70)
>DroEre_CAF1 53815 117 - 1
GAAGAAAAACAGGUGGAAAAAUGCGGCA-AGAAACAAUUUCUGUUGUGCUUAACUUGUUGAUGGCCGGGAGAAACAUUUUGUCAGUGGCAAAAGUUUCAU-UCUUUCCUUCUUUUUCCU
((((((.(((((((....((..((((((-.(((.....)))))))))..)).)))))))((.((..(((((((((.((((((.....))))))))))).)-)))..)).)))))))).. ( -30.00)
>DroYak_CAF1 56165 118 - 1
GAAGAA-AACAGGUGGAAAAAUACGGCAAAGAAACAAUUUCUGUUGUGCUUAACUUGUUGAUGGCCGGGAGAAACAUUUUGUCAGUGGCAAAAGUUUCAUUUCUUUCCUUCUUUUUCCU
...(((-((.(((.(((((....((((.....(((((.....((((....)))))))))....))))...(((((.((((((.....))))))))))).....))))).)))))))).. ( -29.70)
>consensus
GAAGAA_AACAGGUGGAAAAAUACGGCAAAGAAACAAUUUCUGUUGUGCUUAACUUGUUGAUGGCCGGGAGAAACAUUUUGUCAGUGGCAAAAGUUUCAUUUCUUUCCUUCUUUUUCCU
((((((....(((.(((((....((((.....(((((.....((((....)))))))))....))))...(((((.((((((.....))))))))))).)))))..)))..)))))).. (-27.52 = -27.92 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:37 2006