Locus 8027

Sequence ID X_DroMel_CAF1
Location 19,951,927 – 19,952,042
Length 115
Max. P 0.946069
window13171 window13172

overview

Window 1

Location 19,951,927 – 19,952,017
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 89.81
Mean single sequence MFE -23.03
Consensus MFE -17.76
Energy contribution -19.07
Covariance contribution 1.31
Combinations/Pair 1.05
Mean z-score -2.46
Structure conservation index 0.77
SVM decision value 1.11
SVM RNA-class probability 0.917487
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19951927 90 - 22224390
GUUCUCAGAUUCAAUUUGUUAACCACUAACAAACACGGCGGCUCUUAAUGGCGGACACGCCAUAAAUCCUGCCACCAGGUACUUCCGCCA
..............(((((((.....)))))))...(((((......((((((....))))))....((((....)))).....))))). ( -26.70)
>DroSec_CAF1 64221 89 - 1
GUUCUCGGAUUCAAUUUGUUAACCACUAACAAACACGGCGGCUCCUACUGGCGGACACGCCAUAAAUCCUGCCACCAGGUACU-CCGCCA
..............(((((((.....)))))))...(((((..(((..((((((..............))))))..)))....-))))). ( -25.44)
>DroEre_CAF1 51395 90 - 1
GUUCUGGAAUUCAAUUUGUUAGCCACCCACAAACAAGGUCGCUCUCAGUGGCGGACACGCCAUAAAUCCCGCCACCAGGUACUUCCGCCA
(((((((.........((..(((.(((.........))).)))..))((((((....))))))...........))))).))........ ( -23.10)
>DroYak_CAF1 53987 90 - 1
GUUCUUGAAUUCAAUUUGUUAACCACUAACAAACACGACCGCUCUCACUGGCGGACACGCCAUAAAUCCUGCCACCAGGUAAUUCCGCCA
..............(((((((.....)))))))................((((((...(((................)))...)))))). ( -16.89)
>consensus
GUUCUCGAAUUCAAUUUGUUAACCACUAACAAACACGGCCGCUCUCACUGGCGGACACGCCAUAAAUCCUGCCACCAGGUACUUCCGCCA
..............(((((((.....)))))))...(((((.......(((((....))))).......((((....))))...))))). (-17.76 = -19.07 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 19,951,937 – 19,952,042
Length 105
Sequences 4
Columns 105
Reading direction reverse
Mean pairwise identity 91.75
Mean single sequence MFE -25.54
Consensus MFE -23.84
Energy contribution -23.90
Covariance contribution 0.06
Combinations/Pair 1.21
Mean z-score -1.89
Structure conservation index 0.93
SVM decision value 1.36
SVM RNA-class probability 0.946069
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19951937 105 - 22224390
CAAAGUUCGCAGAUUAAUUUGAAUAGUUCUCAGAUUCAAUUUGUUAACCACUAACAAACACGGCGGCUCUUAAUGGCGGACACGCCAUAAAUCCUGCCACCAGGU
....(((.((((((((((((((.......))))))).))))))).))).............((.(((.....((((((....)))))).......))).)).... ( -29.20)
>DroSec_CAF1 64230 105 - 1
CAAAGUUCGCAGAUUAAUUUGAAUAGUUCUCGGAUUCAAUUUGUUAACCACUAACAAACACGGCGGCUCCUACUGGCGGACACGCCAUAAAUCCUGCCACCAGGU
....(((.((((((((((((((.......))))))).))))))).))).............((.(((......(((((....)))))........))).)).... ( -27.14)
>DroEre_CAF1 51405 105 - 1
CAAAGUUCGCAGAUUAAUUUCAAUAGUUCUGGAAUUCAAUUUGUUAGCCACCCACAAACAAGGUCGCUCUCAGUGGCGGACACGCCAUAAAUCCCGCCACCAGGU
....(((.((((((((((((((.......))))))).))))))).))).............(((.((.....((((((....)))))).......)).))).... ( -25.50)
>DroYak_CAF1 53997 105 - 1
CAAAGUUCGCAGAUUAAUUUGAAUAGUUCUUGAAUUCAAUUUGUUAACCACUAACAAACACGACCGCUCUCACUGGCGGACACGCCAUAAAUCCUGCCACCAGGU
....(((.(((((((((((..(.......)..)))).))))))).))).........................(((((....))))).....((((....)))). ( -20.30)
>consensus
CAAAGUUCGCAGAUUAAUUUGAAUAGUUCUCGAAUUCAAUUUGUUAACCACUAACAAACACGGCCGCUCUCACUGGCGGACACGCCAUAAAUCCUGCCACCAGGU
....(((.((((((((((((((.......))))))).))))))).))).............((.(((.....((((((....)))))).......))).)).... (-23.84 = -23.90 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:33 2006