Locus 8026

Sequence ID X_DroMel_CAF1
Location 19,947,991 – 19,948,099
Length 108
Max. P 0.830907
window13170

overview

Window 0

Location 19,947,991 – 19,948,099
Length 108
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 86.74
Mean single sequence MFE -27.65
Consensus MFE -20.00
Energy contribution -21.38
Covariance contribution 1.38
Combinations/Pair 1.09
Mean z-score -2.05
Structure conservation index 0.72
SVM decision value 0.71
SVM RNA-class probability 0.830907
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19947991 108 + 22224390
UCUAUAU----ACAUAU----GUAUGUAUGUUCGAGUAUAUAGGAUAUAGCCGAGCCACGAAGUUUGUUUGCAUUCGAUUGCUUUGCUAAACAUGUGCAAUGAAAAAUGCGUGCAU
.......----....((----((((((((.((((.((((((.(....((((.((((..((((((......)).))))...)))).))))..)))))))..))))..)))))))))) ( -26.90)
>DroSec_CAF1 58958 112 + 1
UCUAUAUAUGUACAUAU----AUAUGUAUGUUCGAGUAUAUAGGAUUUAGCCGAGCCACGAAGUUUGUUUGCAUUCGAUUGCUUUGCUAAACAUGUGCAAUGAAAAAUGCGUGCAU
(((((((((..((((((----....))))))....))))))))).((((((.((((..((((((......)).))))...)))).)))))).(((..(.((.....))..)..))) ( -29.40)
>DroEre_CAF1 47894 95 + 1
UCUAUAU----ACUUG----------UAU------GUAUAUAGGAUAUAGCCGAGCGACG-AGUUUGUUUGCAUUCGAUUGCUUUGCUAAACAUGUGCAAUGAAAAAUGCGUGCAU
(((((((----((...----------...------)))))))))...((((.((((((((-(((........))))).)))))).))))...(((..(.((.....))..)..))) ( -27.70)
>DroYak_CAF1 50105 111 + 1
UCUAUAU----AUAUAUACGAGUA-GUAUGUACGAGUAUAUUGGAUAUAGCCGAGCGACGGAGUUUGUUUGCAUUCGAUUGCUUUGCUAAACAUGUGCAAUGAAAAAUGCGUGCAU
.......----....((((.....-))))(((((....(((((.(((((((.((((((((((((......)).)))).)))))).))))....))).))))).......))))).. ( -26.60)
>consensus
UCUAUAU____ACAUAU____GUA_GUAUGUUCGAGUAUAUAGGAUAUAGCCGAGCCACGAAGUUUGUUUGCAUUCGAUUGCUUUGCUAAACAUGUGCAAUGAAAAAUGCGUGCAU
(((((((....((((((........))))))......)))))))...((((.((((((((((((......)).)))).)))))).))))...(((..(.((.....))..)..))) (-20.00 = -21.38 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:31 2006