Locus 8025

Sequence ID X_DroMel_CAF1
Location 19,946,945 – 19,947,054
Length 109
Max. P 0.790767
window13169

overview

Window 9

Location 19,946,945 – 19,947,054
Length 109
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 70.77
Mean single sequence MFE -29.55
Consensus MFE -15.81
Energy contribution -16.12
Covariance contribution 0.31
Combinations/Pair 1.25
Mean z-score -1.79
Structure conservation index 0.54
SVM decision value 0.59
SVM RNA-class probability 0.790767
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19946945 109 - 22224390
AGUGGAACAAAUGAGGC------AAUC---UGAUAUUUCUUGCAGUGUGCUGGCUAAGCAAAUAGUUGCCAACAAUGCAAAUAGGAUUUGUAUUUGUUUGCCUUUUGGCUGAGCAUCG
.((....(((..(((((------((..---.(((((.(((((((...((.((((..(((.....))))))).)).))))....)))...)))))...)))))))))).....)).... ( -26.80)
>DroEre_CAF1 47321 111 - 1
-------CACUAGAGCUCAAAUGCACAAGUGGAUUUUUCUUCCAGUGCGCUGACUAGCCAAAUAGGUGCAAGCAGUUCAAAUAGGAUUUGUAUUUGUUUGCCUUUUGGCUGAGCAGCG
-------...............((((...((((.......))))))))((((..((((((((..((.((((((((..(((((...)))))...))))))))))))))))))..)))). ( -38.60)
>DroYak_CAF1 49420 109 - 1
AUCUCUCCAAGAUUGGU------CAUA---AGAUUUUUCUUGCAGUGCGCUGACAAGCCAAAUAGUUGCGAACAAUGCAAAUAGGAUUUGUAUUUGUUUGCCUUUUGGCUGAGCACCG
.......(((((..(((------(...---.))))..)))))..((((.......(((((((.((..(((((((((((((((...))))))).)))))))))))))))))..)))).. ( -33.80)
>DroAna_CAF1 76580 95 - 1
-------------UUAU------CAU----AGACUUUUUUCGCAGUGUCCCGUAAGGCCAAAUACUUGCCAACAAUUCAAAUAGGAUUUGUAUUUGUUUGCCUUUUGGCUGAGUGUCG
-------------....------...----.(((......(.(((....(((.((((((((((((...((.............))....)))))))...))))).)))))).).))). ( -19.02)
>consensus
_______CAA_AGAGGU______CAUA___AGAUUUUUCUUGCAGUGCGCUGACAAGCCAAAUAGUUGCCAACAAUGCAAAUAGGAUUUGUAUUUGUUUGCCUUUUGGCUGAGCAUCG
..................................................((...(((((((.....(((((((((((((((...))))))).))))))))..)))))))...))... (-15.81 = -16.12 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:30 2006