| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,946,827 – 19,946,927 |
| Length | 100 |
| Max. P | 0.559609 |
| Location | 19,946,827 – 19,946,927 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 77.04 |
| Mean single sequence MFE | -26.17 |
| Consensus MFE | -13.61 |
| Energy contribution | -14.17 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.559609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19946827 100 + 22224390 CGACAAACAAUUUGUUUGUCCAACACU-------CUCUUUUUCGGAUCAGAAUCGAGAGUCAAGAAGAUUCCAUCUGCCAUCUU-CUGGACUUGGCCAGCUGCAGUUA .(((((((.....)))))))....(((-------(((...(((......)))..))))))..(((((((..(....)..)))))-)).(((((((....))).)))). ( -25.00) >DroEre_CAF1 47216 88 + 1 CGACAAACAAUUU-------------------CUCUCUUUUUCGGAGCAGACUCGAGACUCCAGCAGUUUCCAUCCUCCAUCUU-CUGGACUUGGCCAGCUGCAGUUC .(((.........-------------------...........(((((........).)))).((((((.(((...((((....-.))))..)))..)))))).))). ( -20.50) >DroYak_CAF1 49283 108 + 1 CGACAAACAAUUUGUUUGUCCGACACUCUCUUUUCACUUUUUCGUAGCAGACUCGAGACUCAAGCAGUUGCCAUCUUCCAUUUUGCUGGACUUGGCCAGCUGCAGUUG .(((((((.....)))))))((((...............(((((.((....))))))).....((((((((((...((((......))))..))).))))))).)))) ( -33.00) >consensus CGACAAACAAUUUGUUUGUCC_ACACU______UCUCUUUUUCGGAGCAGACUCGAGACUCAAGCAGUUUCCAUCUUCCAUCUU_CUGGACUUGGCCAGCUGCAGUUA .(((...................................(((((.((....))))))).....(((((..(((...((((......))))..)))...))))).))). (-13.61 = -14.17 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:29 2006