| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,943,219 – 19,943,322 |
| Length | 103 |
| Max. P | 0.665520 |
| Location | 19,943,219 – 19,943,322 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.18 |
| Mean single sequence MFE | -32.20 |
| Consensus MFE | -18.85 |
| Energy contribution | -19.29 |
| Covariance contribution | 0.43 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19943219 103 - 22224390 CGGUUGGAAGUGAAAUCUCAAAGCCCGCUUGUAAUCCCGACGGGUGACA-----UCAUUUCAUAUGCUGGCGCCAGCGGCUUCAAAGCCGUCCGCU--UCGAAGCUCCCU------- .(.((.((((((..........(((((.(((......))))))))(((.-----...........((((....))))((((....)))))))))))--)).)).).....------- ( -34.10) >DroSim_CAF1 49207 103 - 1 CGGCUGGAAGUGAAAUCUCAAAGCCCGCUUGUAAUCCCGACGGGUGACA-----UCAUUUCAUAUGCUGGCGCCAGCGGCUUCAAAGCCGUCCGCU--UCGAAGCUCCCU------- .((((.((((((..........(((((.(((......))))))))(((.-----...........((((....))))((((....)))))))))))--))..))))....------- ( -35.60) >DroEre_CAF1 46220 115 - 1 CGGUUGGAAGUGAAAUCUCAAAGCCCGCUUGUAAUCCCGACGGGUGACAUCACAUCAUUUCAUAUGCUGGCGCCAGCGGCUUCAAAGCCGUCCGCU--CCGAAGCCCCCUGCCCCUG .(((.((((((((.........(((((.(((......)))))))).........)))))))....((((....))))((((((..(((.....)))--..))))))..).))).... ( -37.37) >DroYak_CAF1 48074 102 - 1 CGGUUGCAAGUGAAAUCUCAAAGCCCGCUUGUAAUCCCGACGGGUGACA-----UCAUUUCAUAUGCUGGCGCCAGCGGCUUCAAAGCCGUCCGCU--UCGCAGCCCCC-------- .(((((((((((..........(((((.(((......))))))))(((.-----...........((((....))))((((....)))))))))))--).))))))...-------- ( -38.60) >DroAna_CAF1 75055 90 - 1 CAGUUGAAUGUGAAAUCUCAAAGCCCGCUUGUAAUCCCGGCGGGUGACA-----UCAUUUCAUAUGCUGGCUCCAACACU-------------CUU--UUUAACCUCCCC------- ((((...(((((((((......(((((((.(.....).)))))))....-----..)))))))))))))...........-------------...--............------- ( -23.00) >DroPer_CAF1 54485 101 - 1 ---GUGAAUAUGAAAUCUCAAAGCUCGCUUGUAAUCCCGGCGGGUGACA-----UAAUUUCAUAUGCUGGCACCAGCGGCUCCAAAACUCUUUGCUCUUUGCUCUUUCC-------- ---(..((((((((((......(((((((.(.....).)))))))....-----..)))))))))((((....))))(((.............)))..)..).......-------- ( -24.52) >consensus CGGUUGGAAGUGAAAUCUCAAAGCCCGCUUGUAAUCCCGACGGGUGACA_____UCAUUUCAUAUGCUGGCGCCAGCGGCUUCAAAGCCGUCCGCU__UCGAAGCUCCCU_______ ....((((.((((.........(((((.(((......)))))))).........))))))))...((((....))))((((....))))............................ (-18.85 = -19.29 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:28 2006