Locus 8022

Sequence ID X_DroMel_CAF1
Location 19,942,708 – 19,942,820
Length 112
Max. P 0.849298
window13166

overview

Window 6

Location 19,942,708 – 19,942,820
Length 112
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 90.03
Mean single sequence MFE -32.55
Consensus MFE -26.11
Energy contribution -27.55
Covariance contribution 1.44
Combinations/Pair 1.11
Mean z-score -1.97
Structure conservation index 0.80
SVM decision value 0.78
SVM RNA-class probability 0.849298
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19942708 112 + 22224390
ACAUAAAUUGAAGUCGUGGUAAAAUUUUCAGAUCCUUUGGGAAUUUUAUGACGCUAAGAAGGUGCAGUGUACUUUCUGGCUCAAACACGAGCAACGCUUCAUAAAUCUCGGU
........(((((((((.((((((((..((((...))))..)))))))).)))...(((((((((...))))))))).((((......))))...))))))........... ( -33.70)
>DroSim_CAF1 48721 112 + 1
ACGUAAAUUGAAGUCGUGGUAAAAUUUGCAGAUCCUUUGGGAAUUUUAUGGCGCUAAGAAGGUGCAGUGUACUUUCCGGCUCAAACACGAGCAACGCUUCAUAAAUCUCGGU
.((.....(((((((((.(((((((((.((((...)))).))))))))).)))....((((((((...))))))))..((((......))))...)))))).......)).. ( -32.10)
>DroEre_CAF1 45734 112 + 1
AUAUCAAUUGAAGCCAUUGUAAAAUGGUCAGCUCCUUUGGGAAUUUUAUGGCGCUGAGAAGGUGCAGUGUACUUUCCGGCUCAAACACGAGCAGCGCUCCAUAAAUCUCGGU
...((((..((.((((((....))))))....))..))))((..((((((((((((.((((((((...))))))))).((((......)))))))))..))))))..))... ( -33.70)
>DroYak_CAF1 47547 112 + 1
GUAUAACUUGAAGUCCUUGUGAAAUUGUCAGAUCCUUUGGCAAUUUUAUGGCGCUUAGAAGGCGCAGUGUACUUUCCGGCUCAAACACGAGCAACGCUUCAUAAAUCUCGGU
........((((((....((((((((((((((...)))))))))))))).(((((.....))))).............((((......))))...))))))........... ( -30.70)
>consensus
ACAUAAAUUGAAGUCGUGGUAAAAUUGUCAGAUCCUUUGGGAAUUUUAUGGCGCUAAGAAGGUGCAGUGUACUUUCCGGCUCAAACACGAGCAACGCUUCAUAAAUCUCGGU
........(((((((((((((((((((((((.....)))))))))))))))))....((((((((...))))))))..((((......))))...))))))........... (-26.11 = -27.55 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:27 2006