Locus 8019

Sequence ID X_DroMel_CAF1
Location 19,939,351 – 19,939,448
Length 97
Max. P 0.812943
window13162

overview

Window 2

Location 19,939,351 – 19,939,448
Length 97
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 86.43
Mean single sequence MFE -20.98
Consensus MFE -17.40
Energy contribution -17.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.19
Structure conservation index 0.83
SVM decision value 0.65
SVM RNA-class probability 0.812943
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19939351 97 - 22224390
GAACGUAUCCUGCAAUACAUUUAC--AUUUGCUCUAUUUACUUUUACGACACGUUUGGGCCUCGGCCCAAAGCAACAAUGCCAUUAAACUUGUAGAUAC
....(((((..((((.........--..))))............(((((....(((((((....)))))))(((....)))........)))))))))) ( -20.90)
>DroPse_CAF1 46402 91 - 1
GCAUUGCCCCUGCAAC------AC--AUUUGCUCUAUUUACUUUUACGACACGUUUGGGCCUGGGCCCAAAGCAACAAUGCCAUUAAACUUGUAGAUAC
((((((.....((((.------..--..)))).....................(((((((....)))))))....)))))).................. ( -20.60)
>DroEre_CAF1 42715 97 - 1
GAACGUAUCAGGCAAUACAUUUAC--AUUUGCUCUAUUUACUUUUACGACACGUUUGGGCCUCGGCCCAAAGCAACAAUGCCAUUAAACUUGUAGAUAC
....(((((((((((.........--..)))).)).........(((((....(((((((....)))))))(((....)))........)))))))))) ( -22.70)
>DroYak_CAF1 44339 97 - 1
GAACGUAUCCUGCAAUACAUUUAC--AUUUGCUCUAUUUACUUUUACGACACGUUUGGGCCUCGGCCCAAAGCAACAAUGCCAUUAAACUUGUAGAUAC
....(((((..((((.........--..))))............(((((....(((((((....)))))))(((....)))........)))))))))) ( -20.90)
>DroAna_CAF1 69759 99 - 1
CAACACACACACACACACACUCCCAUGUCUGCUCUAUUUACUUUUACGACACGUUUGGGCCAAGGCCCAAAGCAACAAUGCCAUUAAACUUGUAGAUAC
.........................(((((((.....................(((((((....)))))))(((....)))..........))))))). ( -20.20)
>DroPer_CAF1 50240 91 - 1
GCAUUGCCCCUGCAAC------AC--AUUUGCUCUAUUUACUUUUACGACACGUUUGGGCCUGGGCCCAAAGCAACAAUGCCAUUAAACUUGUAGAUAC
((((((.....((((.------..--..)))).....................(((((((....)))))))....)))))).................. ( -20.60)
>consensus
GAACGUACCCUGCAACACAUUUAC__AUUUGCUCUAUUUACUUUUACGACACGUUUGGGCCUCGGCCCAAAGCAACAAUGCCAUUAAACUUGUAGAUAC
..................................(((((((............(((((((....)))))))(((....)))..........))))))). (-17.40 = -17.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:24 2006