Locus 8018

Sequence ID X_DroMel_CAF1
Location 19,938,857 – 19,938,960
Length 103
Max. P 0.877567
window13161

overview

Window 1

Location 19,938,857 – 19,938,960
Length 103
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 86.23
Mean single sequence MFE -36.10
Consensus MFE -21.90
Energy contribution -22.65
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -3.42
Structure conservation index 0.61
SVM decision value 0.90
SVM RNA-class probability 0.877567
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19938857 103 - 22224390
AAGCAGAAGC------UGAAGCAGAAGCUAAA-GCAGAAUCUGAAGCAAAAGGUCCCUCAAAGGCGGCUAGAAAAAGUUGCACUGCCUUUGGCUUUGUGGCGGCAGCUUU
.....(((((------((..((.(((((((((-((((.((((........)))).........((((((......)))))).))).))))))))))...))..))))))) ( -37.30)
>DroSim_CAF1 44653 110 - 1
AAGCAGAAGCUGAAGCUGAAGCAGAAGCUAAAGGCAGAAGCUGAAGCAGAAGGUCCCUCAAAGGCGGCUAGAAAAAGUUGCACUGCCUUUGGCUUUGUGGCGGCAGCUUU
.(((....)))(((((((..((.((((((((((((((..((....))................((((((......)))))).))))))))))))))...))..))))))) ( -46.90)
>DroEre_CAF1 42247 103 - 1
AAGCAGAAGC------AAAAGCAGAAUCAGCA-GCAGAAGCUGAAGCAAAAGGUCCCUCAAAGGCGGCUAGAAAAAGUUGCACUGCCUUUGGCUUUGUGGCGGCAGCUUU
((((.(..((------.(((((.(..(((((.-......)))))..)...........(((((((((...((.....))...))))))))))))))...))..).)))). ( -30.80)
>DroYak_CAF1 43888 91 - 1
AAGCUGAAGC------AAAAGCA-------------GAAGCUGAAGCAAAAGGUCCCUCAAAGGGGGCUAGAAAAAGUUGCACUGCCUUUGGCUUUGUGGGGGCAGCUUU
((((((..((------...(((.-------------...)))...)).......((((((...(((((((((...((.....))...))))))))).)))))))))))). ( -29.40)
>consensus
AAGCAGAAGC______AAAAGCAGAAGCUAAA_GCAGAAGCUGAAGCAAAAGGUCCCUCAAAGGCGGCUAGAAAAAGUUGCACUGCCUUUGGCUUUGUGGCGGCAGCUUU
....................................(((((((..((..(((((....(((((((((...((.....))...))))))))))))))...))..))))))) (-21.90 = -22.65 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:23 2006