Locus 8016

Sequence ID X_DroMel_CAF1
Location 19,933,585 – 19,933,705
Length 120
Max. P 0.906083
window13159

overview

Window 9

Location 19,933,585 – 19,933,705
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.22
Mean single sequence MFE -26.86
Consensus MFE -21.56
Energy contribution -22.50
Covariance contribution 0.94
Combinations/Pair 1.12
Mean z-score -1.94
Structure conservation index 0.80
SVM decision value 1.05
SVM RNA-class probability 0.906083
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19933585 120 - 22224390
UUAAUGUCUGCAAUUAGCUAAACAAAUUGGUUGUUUUAUAAAAAAAAACCCUCAUGAUAGGACUUACGGGCGCGUCGGGGCCAAAAAACCAAAGAACUCUAGUUCGUUGUGGAGGCAUUA
.((((((((.((..((((........(((((((((((((.................))))))).....(((.(....).)))....)))))).((((....)))))))))).)))))))) ( -28.73)
>DroSec_CAF1 46697 119 - 1
UUAGUGUCUGCAAUUAGCAAAACAAAUUGGUUGUUUUGG-UAUAAAAACCCUCAUGAUAGAAAUAAUGGGCGCGUCGGGGCCGAAAAACCAAAGAACUCUAGUUCGUUGUGGAGACAUUA
.((((((((.((..((((........((((((.((((((-(......((((((((..((....))))))).).))....))))))))))))).((((....)))))))))).)))))))) ( -32.70)
>DroSim_CAF1 38723 119 - 1
UUAGUGUCUGUAAUUAGCAAAACAAAUUGGUUGUUUUAA-AAAAAAAACCCUCAUGAUAGAAAUAAUGGGCGCGUCGGGGCCAAAAAACCAAAGAACUCUAGUUCGUUGUGGAGACAUUA
.((((((((.((..((((........(((((((((((..-....)))))...................(((.(....).)))....)))))).((((....)))))))))).)))))))) ( -27.20)
>DroYak_CAF1 42104 97 - 1
UGAUUGUCUGCAAUUAGCAAAACAAAUUGGUUGUUUUGUA---AAAAACCCUCAUCAG--------------------GCCCAAAAAACCAAAGAACUCUAGUUCGUUACAAAGACAUUA
....(((((.....((((........(((((((((((...---.)))))(((....))--------------------).......)))))).((((....))))))))...)))))... ( -18.80)
>consensus
UUAGUGUCUGCAAUUAGCAAAACAAAUUGGUUGUUUUAU_AAAAAAAACCCUCAUGAUAGAAAUAAUGGGCGCGUCGGGGCCAAAAAACCAAAGAACUCUAGUUCGUUGUGGAGACAUUA
..(((((((.((..((((........(((((((((((.......)))))...................(((.(....).)))....)))))).((((....)))))))))).))))))). (-21.56 = -22.50 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:21 2006