| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,912,484 – 19,912,579 |
| Length | 95 |
| Max. P | 0.979246 |
| Location | 19,912,484 – 19,912,579 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 81.60 |
| Mean single sequence MFE | -29.78 |
| Consensus MFE | -22.74 |
| Energy contribution | -23.63 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.979246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19912484 95 + 22224390 AUCCUUUUAGGUAUGUCAUGUGGCAUCCAC------------------AUUCGUGCC--UCGUUCCGGUUGUCCCGGCAACGUAACCCGGAAUAUUUAGCAUACUACGGGCAUAA .(((....(((((((..((((((...))))------------------)).))))))--).(((((((..((..((....))..)))))))))..............)))..... ( -31.00) >DroEre_CAF1 24215 107 + 1 AUCCUUUUAGGUAUGUCAUGUGGCAUCCACAUCCACAUCCA------CAUCCGUGCC--CCGUUCCGGUAGUCCUGGCAACGUAACCCGGAAUAUUUAGCAUACUAUGGGCGUAA .........((.((((.((((((...))))))..)))))).------.......(((--(.(((((((..((..((....))..)))))))))...(((....))).)))).... ( -29.70) >DroYak_CAF1 26205 115 + 1 AUCCUUUUAGGUAUGUCAUGUGCCAUCCACAUCCACAUCCACAUGCACAUCCGUGCUCCUCGUUCCGGUAGUCCUGGCAACGUAACCCGGAAUAUUUAGCAUACUACCACCAUAA .........((.((((((((((.................)))))).))))))(((((....(((((((..((..((....))..)))))))))....)))))............. ( -28.63) >consensus AUCCUUUUAGGUAUGUCAUGUGGCAUCCACAUCCACAUCCA______CAUCCGUGCC__UCGUUCCGGUAGUCCUGGCAACGUAACCCGGAAUAUUUAGCAUACUACGGGCAUAA ..((.....))(((((((((((.....)))))....................((((.....(((((((..((..((....))..))))))))).....))))......)))))). (-22.74 = -23.63 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:10 2006