Locus 8007

Sequence ID X_DroMel_CAF1
Location 19,908,331 – 19,908,422
Length 91
Max. P 0.666032
window13144

overview

Window 4

Location 19,908,331 – 19,908,422
Length 91
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 88.93
Mean single sequence MFE -19.93
Consensus MFE -13.90
Energy contribution -13.79
Covariance contribution -0.11
Combinations/Pair 1.10
Mean z-score -2.69
Structure conservation index 0.70
SVM decision value 0.28
SVM RNA-class probability 0.666032
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19908331 91 + 22224390
CAGCUCCCAUUCCCAGGAAUUCUCCACCAACAGGCAACCAACCACCACCAGCACCUUCAA-CUCCAGUUGCUGUUGGAGAUCCAGCUAUCCU
.((((...((((....))))((((((......((.......)).....(((((.((....-....)).))))).))))))...))))..... ( -19.70)
>DroSec_CAF1 22476 87 + 1
CAGCUCCCAUUCCCCAGGAUGCUCCACCAACGGGCC-CCAACCACCUC---CUCCUUCAA-CUCCAGUUGCUGUUGGAGAUCCAGCUAUCCU
...............((((((((........((...-....))..(((---(..(..(((-(....))))..)..))))....))).))))) ( -19.70)
>DroSim_CAF1 18557 88 + 1
CAGCUCCCAUUCCCCAGGAUGCUCCACCAACGGGCC-CCAACCACCUC---CACCUUCAGCCUUCAGUUGCUGUUGGAGAUCCAGCUAUCCU
...............((((((((........((...-....))..(((---((....((((........)))).)))))....))).))))) ( -20.40)
>consensus
CAGCUCCCAUUCCCCAGGAUGCUCCACCAACGGGCC_CCAACCACCUC___CACCUUCAA_CUCCAGUUGCUGUUGGAGAUCCAGCUAUCCU
.((((..(((((....))))).....(((((((.....((((........................)))))))))))......))))..... (-13.90 = -13.79 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:07 2006