Locus 8005

Sequence ID X_DroMel_CAF1
Location 19,906,356 – 19,906,454
Length 98
Max. P 0.997535
window13141

overview

Window 1

Location 19,906,356 – 19,906,454
Length 98
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 91.37
Mean single sequence MFE -21.20
Consensus MFE -20.64
Energy contribution -20.60
Covariance contribution -0.04
Combinations/Pair 1.11
Mean z-score -1.82
Structure conservation index 0.97
SVM decision value 2.88
SVM RNA-class probability 0.997535
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19906356 98 + 22224390
GUGCUUGUGCGCCAGUGCGUGUUGGAUUCACAAAUUUAUUUUUAUGAUCAUGUGAAAUUUAUUAAUAUUUAUUGUUGUACGUAUUUUCGCACUCCCCC-------
......(((((..((((((((.....((((((...((((....))))...))))))......(((((.....)))))))))))))..)))))......------- ( -22.50)
>DroSec_CAF1 20531 98 + 1
GUGCUUGUGCGCCAGUGCGUGUUGGAUUCACAAAUUUAUUUUUAUGAUCAUGUGAAAUUUAUUAAUAUUUAUUGUUGUACGUAUUUUCGCACUCCCCC-------
......(((((..((((((((.....((((((...((((....))))...))))))......(((((.....)))))))))))))..)))))......------- ( -22.50)
>DroSim_CAF1 16540 98 + 1
GUGCUUGUGCGCCAGUGCGUGUUGGAUUCACAAAUUUAUUUUUAUGAUCAUGUGAAAUUUAUUAAUAUUUAUUGUUGUACGCAUUUUCGCACUCCCCC-------
......(((((..((((((((.....((((((...((((....))))...))))))......(((((.....)))))))))))))..)))))......------- ( -24.50)
>DroEre_CAF1 19501 97 + 1
GUGCUUGUGCGCCAGUGCGUGUUGGAUUCACAAAUUUAUUUUUAUGAUCAUGUGAAAUUUAUUAAUAUUUAUUGUUGUACGUAUUUUCGCACUCCCC--------
......(((((..((((((((.....((((((...((((....))))...))))))......(((((.....)))))))))))))..))))).....-------- ( -22.50)
>DroAna_CAF1 43654 101 + 1
G-GCCU---CUUCAGUGCGUGUUGGAUUCACAAAUUUAUUUUUAUGAUCAUGUGAAAUUUAUUAAUAUUUAUUGUUGUAUGUAUUUUGGUAUUCCCUUAUUUUUG
.-(((.---....((((((((.....((((((...((((....))))...))))))......(((((.....)))))))))))))..)))............... ( -14.00)
>consensus
GUGCUUGUGCGCCAGUGCGUGUUGGAUUCACAAAUUUAUUUUUAUGAUCAUGUGAAAUUUAUUAAUAUUUAUUGUUGUACGUAUUUUCGCACUCCCCC_______
......(((((..((((((((.....((((((...((((....))))...))))))......(((((.....)))))))))))))..)))))............. (-20.64 = -20.60 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:05 2006