Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,905,935 – 19,906,030 |
Length | 95 |
Max. P | 0.578238 |
Location | 19,905,935 – 19,906,030 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.18 |
Mean single sequence MFE | -16.16 |
Consensus MFE | -11.07 |
Energy contribution | -11.10 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.09 |
Mean z-score | -1.20 |
Structure conservation index | 0.69 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19905935 95 + 22224390 UUUCUCGGAGCACCAAC-------ACCUCGCCA------CCA-CUCCUCAUCUUUAUCAUCGCUCGCAGGGUAAUAAGAUAACCUUAUUGCAUAUGCUUAUAUUACCGU .....((((((......-------.........------...-..................))))(((..((((((((.....))))))))...))).........)). ( -15.22) >DroSec_CAF1 20170 95 + 1 UUCCUCGGAGCACCAAC-------ACCUCGGCA------CCC-CUCCUCAUCUUUAUCAUCGCUCGCAGGGUAAUAAGAUAACCUUAUUGCAUAUGCUUAUAUUACCGU .......(((((.....-------.(((((((.------...-..................)).)).)))((((((((.....))))))))...))))).......... ( -17.85) >DroSim_CAF1 16177 95 + 1 UUCCUCGGAGCACCGAC-------ACCUCGGCA------CCC-CUCCUCAUCUUUAUCAUCGCUCGCAGGGUAAUAAGAUAACCUUAUUGCAUAUGCUUAUAUUACCGU ......((((..((((.-------...))))..------...-))))..................(((..((((((((.....))))))))...)))............ ( -20.20) >DroEre_CAF1 19091 99 + 1 CUACUUGGAUCC-CAAC-CCCACCACCCCGCCA-------CC-CGCCUCAUCUUUAUCAUCGCUCGCUGGGUAAUAAGAUAACCUUAUUGCAUAUGCUUAUAUUACCGU ......((....-....-...........((..-------..-.))...................((...((((((((.....))))))))....))........)).. ( -11.50) >DroYak_CAF1 20178 108 + 1 UUGCUCGGAUCCACAACACCCGCCACCCGUCAACCAUCGCCC-CGCCUCAUCUUUAUCAUCGCUCGCAGGGUAAUAAGAUAACCUUAUUGCAUAUGCUUAUAUUACCGU .....(((.............((....((........))...-.))...................(((..((((((((.....))))))))...)))........))). ( -15.80) >DroAna_CAF1 43316 78 + 1 UUCG-------------------------GCUA------CGGUUUCUGCUUCUUUAUCAUCGCUCGCAGGGUAAUAAGAUAACCUUAUUGCAUAUGUUUAUAUUACCGU ....-------------------------...(------((((.(((((................)))))((((((((.....)))))))).............))))) ( -16.39) >consensus UUCCUCGGAGCACCAAC_______ACCUCGCCA______CCC_CUCCUCAUCUUUAUCAUCGCUCGCAGGGUAAUAAGAUAACCUUAUUGCAUAUGCUUAUAUUACCGU .................................................................(((..((((((((.....))))))))...)))............ (-11.07 = -11.10 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:04 2006