Locus 8003

Sequence ID X_DroMel_CAF1
Location 19,904,793 – 19,904,901
Length 108
Max. P 0.999652
window13139

overview

Window 9

Location 19,904,793 – 19,904,901
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 95.56
Mean single sequence MFE -23.74
Consensus MFE -23.06
Energy contribution -23.50
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -2.12
Structure conservation index 0.97
SVM decision value 3.84
SVM RNA-class probability 0.999652
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19904793 108 + 22224390
CUUUGAAUUAUGGCAAAUUACAUUCUUAUCGAUUUUGGUCCAUUUUUUGGUCGCCACUUUCUGCAGGCUCCUCUUCACUUUUAUACCCUUGCAGGAUGUGGCAUUAUC
..(..((..((((((((................))))..))))..))..)..(((((.(((((((((....................))))))))).)))))...... ( -25.54)
>DroSec_CAF1 19053 108 + 1
CUUUGAAUUAUGGCAAAUUACAUUCUUAUCGAUUUUGGUCCAUUUUUUGGUCGCCACUUUCUGCAGGCUCCUCUUCACUUUUAUACCCUUGCAGGACGUGGCAUUAUC
..(..((..((((((((................))))..))))..))..)..(((((.(((((((((....................))))))))).)))))...... ( -25.54)
>DroSim_CAF1 14417 108 + 1
CUUUGAAUUAUGGCAAAUUACAUUCUUAUCGAUUUUGGUCCAUUUUUUGGUCGCCACUUUCUGCAGGCUCCUCUUCACUUUUAUACCCUUGCAGGACGUGGCAUUAUC
..(..((..((((((((................))))..))))..))..)..(((((.(((((((((....................))))))))).)))))...... ( -25.54)
>DroEre_CAF1 17949 108 + 1
CGUUGAAUUAUGGCAAAUUACAUUCUUAUCGAUUUUGGUCCAUUUUUUGGUCGCCGCUUUCCGCAGGCUCCUCUACACUUUAAUACCCUUGCAGGAUGUGGCAUUAUC
.(((((...(((........))).....)))))....(.(((.....))).)(((((..((((((((....................))))).))).)))))...... ( -22.25)
>DroYak_CAF1 19009 108 + 1
CUUUGAAUUAUGGCAAAUUACAUUCUUAUCGAUUUUGGUCCAUUUUUUGGUCGCCACUUUCUGCAGACUCCUCCUCACCUAAAUACCCUUGCAGGACAUGGCAUUAUC
..(..((..((((((((................))))..))))..))..)..((((..((((((((......................))))))))..))))...... ( -19.84)
>consensus
CUUUGAAUUAUGGCAAAUUACAUUCUUAUCGAUUUUGGUCCAUUUUUUGGUCGCCACUUUCUGCAGGCUCCUCUUCACUUUUAUACCCUUGCAGGACGUGGCAUUAUC
..(..((..((((((((................))))..))))..))..)..(((((.(((((((((....................))))))))).)))))...... (-23.06 = -23.50 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:53:03 2006