| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,903,168 – 19,903,258 |
| Length | 90 |
| Max. P | 0.649781 |
| Location | 19,903,168 – 19,903,258 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 89.81 |
| Mean single sequence MFE | -13.33 |
| Consensus MFE | -11.25 |
| Energy contribution | -11.25 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19903168 90 + 22224390 UGCCCCAUCCCCUCCCGUCAUCAACCCCGUUGGCGGCUUUCAAUUUAUGUAUAAUCCCUUUUAGAAAGCCACAACUCCUUUCAGCCCAUU ............................((((..(((((((......................))))))).))))............... ( -13.25) >DroSim_CAF1 12844 85 + 1 UGCCCCAUCGCCU-----CAUCAACCCCUUUGGCGGCUUUCAAUUUAUGUAUAAUCCCUUUUAGAAAGCCACAACUCCUUUCAGCCCAUU .((......(((.-----.............)))(((((((......................))))))).............))..... ( -13.59) >DroEre_CAF1 16508 85 + 1 CGCCUCAUCUGCU-----CAUGAAACCCUUUGGCGGCUUUCAAUUUAUGUAUAAUCCCUUUUGGAAAGCCACAACUCCUUUCAGCCCAUU .(((((((.....-----.))))........)))(((((((.......(......).......))))))).................... ( -13.14) >consensus UGCCCCAUCCCCU_____CAUCAACCCCUUUGGCGGCUUUCAAUUUAUGUAUAAUCCCUUUUAGAAAGCCACAACUCCUUUCAGCCCAUU .(((...........................)))(((((((......................))))))).................... (-11.25 = -11.25 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:59 2006