Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 25,604 – 25,724 |
Length | 120 |
Max. P | 0.890760 |
Location | 25,604 – 25,724 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.75 |
Mean single sequence MFE | -34.38 |
Consensus MFE | -30.64 |
Energy contribution | -31.57 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.11 |
Mean z-score | -1.91 |
Structure conservation index | 0.89 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890760 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 25604 120 + 22224390 CACAAUUUUCUUUAAAAUUGAUGAGCUUUACGAUCUGCAUACCGGUUUCUUAUCUGAUUUAAAGACUAUUGUGUCUCACGAGGGUGGUGAUGUGCUGAUCGGUGAGCCGUUUCGUCGACU .................(((((((((((..(((((.((((((((.(((((((.......)))((((......))))...)))).))))...)))).)))))..))))....))))))).. ( -31.50) >DroSec_CAF1 12771 120 + 1 CACAAUUUUCUUCAAAAUUGAUGAGCUUUUUGAUCUGCAUACCGCUUUCUUAUCUGAUUUAAAGACUAUUGUGUCUCACGAGGGUGGUGAUGUGCUGAUCGGUGAGCCGUUUCGUCGACU .................(((((((((((.((((((.((((((((((((((((.......)))((((......))))...)))))))))...)))).)))))).))))....))))))).. ( -34.60) >DroSim_CAF1 13065 120 + 1 CACAAUUUUCUUCAAAAUUGAUGAGCUUUUUGAUCUGCAUACCGCUUUCUUAUCUGAUUUAAAGACUAUUGUGUCUCACGAGGGUGGUGAUGUGCUGAUCGGUGAGCCGUUUCGUAGACU ..(((((((....)))))))(((.((((.((((((.((((((((((((((((.......)))((((......))))...)))))))))...)))).)))))).))))))).......... ( -33.30) >DroYak_CAF1 7266 120 + 1 CACAAUUUUCUUUAAAAUCGAUGAGCUGUACGAUCUGCAUACCGCCUUCUUAUCUGACUUAAAGACCAUUGUGUCUCAUGAGGGCGGUGAUGUGCUGAUCGGUGAACCGUUUCGUCGUCU ..................((((((((.....((((.(((((((((((((......(((.(((......))).)))....)))))))))...)))).))))((....))).)))))))... ( -38.10) >consensus CACAAUUUUCUUCAAAAUUGAUGAGCUUUACGAUCUGCAUACCGCUUUCUUAUCUGAUUUAAAGACUAUUGUGUCUCACGAGGGUGGUGAUGUGCUGAUCGGUGAGCCGUUUCGUCGACU .................(((((((((((.((((((.((((((((((((((((.......)))((((......))))...)))))))))...)))).)))))).))))....))))))).. (-30.64 = -31.57 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:03 2006