| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,896,797 – 19,896,902 |
| Length | 105 |
| Max. P | 0.915643 |
| Location | 19,896,797 – 19,896,902 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 66.13 |
| Mean single sequence MFE | -37.97 |
| Consensus MFE | -24.50 |
| Energy contribution | -25.37 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.915643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19896797 105 + 22224390 -------------GAUCCUUGGGCGUUCAAAGGGCUUUGGCUUUCGAAGUUGACUCUUCGGAGACACCA--ACCGUUGGCGAGGCGGUCCCGUCAGACUUUUGGGCGCCCAUUUUGGGUG -------------.((((.((((((((((((((..((((((((((((((......))))))))......--((((((.....))))))...))))))))))))))))))))....)))). ( -45.10) >DroPse_CAF1 12678 107 + 1 GAGGACGAGUAGGAGUUCUUGGGCAUUCGAAAGG------CUUUCGAAGUUUACUCUUUGGAGACGACACGGCUAAUGGCAG-CGGGUCCUGCCAGACACUCGGGCGC------UGGGUC .((((((((((((..(((..((((...(....))------)))..))).))))))).(((....)))..(.(((......))-).)))))).((((.(.(....).))------)))... ( -31.60) >DroSec_CAF1 11629 105 + 1 -------------GAUCCUUGGGCGUCCAAAGGGCUUUGGCUUUCGAAGUUGGCUCUUCGAAGACACCA--ACCGUUGGCGGGGCGGUCCCAUCAGACUUAUGGGCGCCCAUUUUGGGUG -------------.((((.((((((((((.(((.((.(((..(((((((......)))))))(((....--.(((....)))....))))))..)).))).))))))))))....)))). ( -44.00) >DroEre_CAF1 10809 85 + 1 -------------GAUCCUUGGGCGUUCAAAGGGCUUGGGCUUUCGAAGUUGGCUCUUCGGAGACACAU--G--------------------CCAGACUUUUGGGCGCCCACUUUGGGUG -------------.((((.((((((((((((((.....(((((((((((......))))))))......--)--------------------))...))))))))))))))....)))). ( -37.10) >DroYak_CAF1 11178 93 + 1 -------------GAUCCUUGGGCGUUCAAAGGGCUUUGGCUUUCGAAGUUGGCUCUUCGGAGACACAU--ACCG------------UCCUGUCAGACUUUUGGGCGCCCAUUUUGGGUG -------------.((((.((((((((((((((..((((((.(((((((......)))))))(((....--...)------------))..))))))))))))))))))))....)))). ( -39.50) >DroPer_CAF1 15744 106 + 1 -AGGACGAGUAGGAGUUCUUGGGCAUUCGAAAGG------CUUUCGAAGUUUACUCUUUCGAGACGACACGGCUAAUGGCAG-CGGGUCCUGCCAGACAUUCGGGCGC------UGGGUC -.(((.(((((((..(((..((((...(....))------)))..))).))))))).))).....(((.((((...((((((-......))))))(.....)....))------)).))) ( -30.50) >consensus _____________GAUCCUUGGGCGUUCAAAGGGCUUUGGCUUUCGAAGUUGACUCUUCGGAGACACCA__ACCG_UGGC_G___GGUCCUGCCAGACUUUUGGGCGCCCAUUUUGGGUG ..............((((.((((((((((((((((....))((((((((......))))))))..................................))))))))))))))....)))). (-24.50 = -25.37 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:52 2006