Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,891,981 – 19,892,080 |
Length | 99 |
Max. P | 0.838223 |
Location | 19,891,981 – 19,892,080 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 94.77 |
Mean single sequence MFE | -33.66 |
Consensus MFE | -27.81 |
Energy contribution | -28.61 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.83 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19891981 99 - 22224390 CUCGCCAUGGGGAGACGACGUCCAUGGACGAACCCCUGAGUGUGUCCACUAUUCGGGACCCCUAGG-GGAUGUGCAGCUAAAUCUUUUAAAAUACAUCUA ....((..((((......((((....))))....(((((((((....)).))))))).))))..))-(((((((..................))))))). ( -29.37) >DroSec_CAF1 7034 99 - 1 CUCGCCCUGGGGAGCCGACGUCCAUGGACGAACCCCUGAGUGUGUCCACUAUUCGGGACCCCUGGG-GGAUGUGCAGCUAAAUCUUUUAAAAUACAUCUA ....(((.((((......((((....))))....(((((((((....)).))))))).)))).)))-(((((((..................))))))). ( -33.67) >DroSim_CAF1 6483 99 - 1 CUCGCCCUGGGGAGCCGACGUCCAUGGACGAACCCCUGAGUGUGUCCACUAUUCGGGACCCCUGGG-GGAUGUGCAGCUAAAUCUUUUAAAAUACAUCUA ....(((.((((......((((....))))....(((((((((....)).))))))).)))).)))-(((((((..................))))))). ( -33.67) >DroEre_CAF1 6315 99 - 1 GUCGCCCUGGGGAGCCCUCGUCCAUGGACGAACCCCUGAGUGUGUCCACUAUUCGGCGCCCCUGGG-GGAUGUGAAGCUAAAUCUUUUAAAAUACAUCUA ....(((.((((.(((.(((((....))))).......((((....))))....))).)))).)))-((((((((((......))))......)))))). ( -34.90) >DroYak_CAF1 6540 100 - 1 CUCCCCCUGGGGAGCCCACGUCCAUGGACGAACCCCUGAGUGUGUCCACUAUUCGGCACCCCUGGGGGGAAGUGCAGCUAAAUCUUUUAAAAUACAUCUA .(((((((((((.(((..((((....))))........((((....))))....))).)))).))))))).............................. ( -36.70) >consensus CUCGCCCUGGGGAGCCGACGUCCAUGGACGAACCCCUGAGUGUGUCCACUAUUCGGGACCCCUGGG_GGAUGUGCAGCUAAAUCUUUUAAAAUACAUCUA ....(((.((((......((((....))))....(((((((((....)).))))))).)))).))).(((((((..................))))))). (-27.81 = -28.61 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:51 2006