| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,890,967 – 19,891,068 |
| Length | 101 |
| Max. P | 0.968300 |
| Location | 19,890,967 – 19,891,068 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.90 |
| Mean single sequence MFE | -22.55 |
| Consensus MFE | -12.26 |
| Energy contribution | -13.82 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.968300 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19890967 101 - 22224390 CACUCCUCAAGCAGUCAGC--CAC-UUGCCUUCGCUGAGUAAAUGUUUGCAUUUAUUUGCAUUUCAACGGAGUCAAAUAAAUAUGAAAGCUCAGCACUUGCGAA---------------- ..........((((...((--...-..))....(((((((.....(((..(((((((((.((((.....)))))))))))))..))).)))))))..))))...---------------- ( -23.70) >DroPse_CAF1 6388 100 - 1 UACUC---UGACAUUCACUUUCUU-UUGUUUUUCGUAAGUAAAUGUUUGCAUUUAUUUGCAUUUCAACAGAGCCAAAUAAAUAUGAAACCACAACACAAAGAAA---------------- .....---...........(((((-((((((((((((((((((((....)))))))))))..(((....)))............))))....)))).)))))).---------------- ( -17.10) >DroSec_CAF1 6045 96 - 1 -----CUCAAGCACUCAGC--CAC-UUGGCUUCGCUGAGUAAAUGUUUGCAUUUAUUUGCAUUUUAACGGAGUCAAAUAAAUAUGAAAGCUCAGCACUUGCGAA---------------- -----.....(((...(((--(..-..))))..(((((((.....(((..(((((((((.((((.....)))))))))))))..))).)))))))...)))...---------------- ( -27.30) >DroSim_CAF1 5506 96 - 1 -----CUAAAGCACUCAGC--CAC-UUGGCUUCGCUGAUUAAAUGUUUGCAUUUAUUUGCAUUUCAACGGAUUCAAAAAAAUAUGAAAGCUCAGCACUUGCGAA---------------- -----.....(((...(((--(..-..))))..(((((.((((((....))))))...((.(((((.................))))))))))))...)))...---------------- ( -21.13) >DroYak_CAF1 5609 84 - 1 -----------------GC--GAC-UUGGCUUCGCUGAGUAAAUGUUUGCAUUUAUUUGCAUUUCAACGGAGUCAAAUAAAUAUGAAAGCUCAGCACUUGCGAA---------------- -----------------..--...-...((...(((((((.....(((..(((((((((.((((.....)))))))))))))..))).)))))))....))...---------------- ( -21.60) >DroAna_CAF1 25495 106 - 1 ------------ACCCACU--CACUUUGUUUUUCUUGAGUAAAUGUUUGCAUUUAUUUGCAUUUCAACGGAGUCAAAUAAAUAUGAAAGCUCAGCAUUUGGCAGAAGGAAAACAGACAGA ------------.......--...((((((((((((((((.....(((..(((((((((.((((.....)))))))))))))..))).)))).((.....))..)))))))))))).... ( -24.50) >consensus ________AAGCACUCAGC__CAC_UUGGCUUCGCUGAGUAAAUGUUUGCAUUUAUUUGCAUUUCAACGGAGUCAAAUAAAUAUGAAAGCUCAGCACUUGCGAA________________ .................................(((((((.....(((..(((((((((.((((.....)))))))))))))..))).)))))))......................... (-12.26 = -13.82 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:51 2006