Locus 7996

Sequence ID X_DroMel_CAF1
Location 19,890,746 – 19,890,846
Length 100
Max. P 0.575204
window13130

overview

Window 0

Location 19,890,746 – 19,890,846
Length 100
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 80.94
Mean single sequence MFE -36.36
Consensus MFE -24.98
Energy contribution -25.74
Covariance contribution 0.76
Combinations/Pair 1.13
Mean z-score -1.59
Structure conservation index 0.69
SVM decision value 0.08
SVM RNA-class probability 0.575204
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19890746 100 + 22224390
--UGAAUACUUUCGUUUGGUGGGUUCUUGG---CUGCACCUGUUGAUCGCCUGCAGGUCCUGCGGGCU-UGGCCUUG-GGCAACAGGUGACUCCAGUCGGAAGAGCA
--......((((((.((((.((((.....)---)).((((((((....((((((((...)))))))).-..(((...-))))))))))).).)))).)))))).... ( -40.80)
>DroSec_CAF1 5835 91 + 1
--GGAAUACUUUCAGUUGGCGCAUUCUUGG---CUGCACCUGUUGAUCGCCUGCAGGUCCUGCGGGCUUUGGCCUUG-GGCAACAGGUGACUCCAGU----------
--(((.......((((..(.......)..)---)))((((((((....((((((((...))))))))....(((...-)))))))))))..)))...---------- ( -36.00)
>DroSim_CAF1 5296 91 + 1
--GGAAUACUUUCAGUUGGCGCAUUCUUGG---CUGCACCUGUUGAUCGCCUGCAGGUCCUGCGGGCUUUGGCCUUG-GGCAACAGGUGACUCCAGU----------
--(((.......((((..(.......)..)---)))((((((((....((((((((...))))))))....(((...-)))))))))))..)))...---------- ( -36.00)
>DroEre_CAF1 5117 100 + 1
--CGAAUACUUCUAGUUGCCGGAUUCCUGG---CUGCACCUGUUGAUCAACUGCAGCUCCCGCGGG-UUUGGCCUUG-GGCAACAGGUGACUCUAGUUGGAAAAGCA
--......((.((((..(((((....))))---)..(((((((((..(((..((....((....))-....)).)))-..)))))))))...))))..))....... ( -33.30)
>DroYak_CAF1 5379 106 + 1
GGGGAAUACUUUUAGUUGGCGGAUUCCUGAUUCCUGCACCUGUUGAUCGCCUGCAGGUCCUGCAGC-UUUAACCUUGGGGCAACAGGUGACACUAGUUGGGAAAGCA
..................((...((((..(((..(((((((((((...((.(((((...)))))))-.....((....))))))))))).))..)))..)))).)). ( -35.70)
>consensus
__GGAAUACUUUCAGUUGGCGGAUUCUUGG___CUGCACCUGUUGAUCGCCUGCAGGUCCUGCGGGCUUUGGCCUUG_GGCAACAGGUGACUCCAGU_GG_A_AGCA
..........................((((......((((((((....((((((((...))))))))....(((....)))))))))))...))))........... (-24.98 = -25.74 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:50 2006