Locus 7995

Sequence ID X_DroMel_CAF1
Location 19,889,186 – 19,889,291
Length 105
Max. P 0.998321
window13129

overview

Window 9

Location 19,889,186 – 19,889,291
Length 105
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 83.89
Mean single sequence MFE -21.15
Consensus MFE -17.40
Energy contribution -18.08
Covariance contribution 0.68
Combinations/Pair 1.11
Mean z-score -3.19
Structure conservation index 0.82
SVM decision value 3.07
SVM RNA-class probability 0.998321
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19889186 105 - 22224390
CAAAAACAAAGUCGGUUGCAAAAAAAUGUUUAAAACUUGCCAACUUGUUUGGACUUGGUUGGGUAUAGCGCAACGAAAUAAAAACCGACAAA-------ACAAAAAAAAAAA
..........(((((((..........(((((((.(..(....)..))))))))((.((((.(.....).)))).)).....)))))))...-------............. ( -19.30)
>DroSec_CAF1 4167 93 - 1
CAAAAACAAAGUCGGUUGCAAAAAAAUGUUUAAAACUUGCCAACUUGUUUGGGCUUCGUUGGGUAUAACGCAACGAAAUAAAAACCGACAA-------------------AA
..........(((((((.....................(((..........)))(((((((.(.....).))))))).....)))))))..-------------------.. ( -23.30)
>DroSim_CAF1 3652 93 - 1
CAAAAACAAAGUCGGUUGCAAAAAAAUGUUUAAAACUUGCCAACUUGUUUGGGCUUCGUUGGGUAUAACGCAACGAAAUAAAAACCGACAA-------------------AA
..........(((((((.....................(((..........)))(((((((.(.....).))))))).....)))))))..-------------------.. ( -23.30)
>DroEre_CAF1 3681 88 - 1
CAAAAACAAAGUCGGUUGCAAA-AAAUGUUUUAAACUUGCCAACUUGUUUGGGCUUCGUUGGGAAUAAUAAAACGAAAUAAA-ACCG----------------------AAA
...........((((((.....-...(((((((...((.(((((..((....))...))))).))...)))))))......)-))))----------------------).. ( -18.04)
>DroYak_CAF1 3881 111 - 1
CAAAAACAAAGUCGGUUGCAAA-AAAUGUUUAAAACUUGCCAACUUGUUUGGGCUUCGUUGGGAAUAACACAGCGAAAUAAAAACCGACAAAUACGAAAAAAAACAAAAAAA
..........(((((((.....-...............(((..........)))((((((((......).))))))).....)))))))....................... ( -21.80)
>consensus
CAAAAACAAAGUCGGUUGCAAAAAAAUGUUUAAAACUUGCCAACUUGUUUGGGCUUCGUUGGGUAUAACGCAACGAAAUAAAAACCGACAA__________________AAA
..........(((((((......................((((.....))))..(((((((.(.....).))))))).....)))))))....................... (-17.40 = -18.08 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:49 2006