Locus 7994

Sequence ID X_DroMel_CAF1
Location 19,888,441 – 19,888,538
Length 97
Max. P 0.697123
window13128

overview

Window 8

Location 19,888,441 – 19,888,538
Length 97
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 93.86
Mean single sequence MFE -28.08
Consensus MFE -24.00
Energy contribution -24.04
Covariance contribution 0.04
Combinations/Pair 1.11
Mean z-score -1.35
Structure conservation index 0.85
SVM decision value 0.34
SVM RNA-class probability 0.697123
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19888441 97 + 22224390
CGGCUGCUCUUCCAAACCGACGAACAUAAUCCCAUUAGGAACACCUCGUCGCGAUUUGGACGGAAAUUCCGCUGGCAACAGUUAGUCGUUA------UGUUCA
((((((.((((((((((((((((......(((.....))).....)))))).).)))))).)))......((((....))))))))))...------...... ( -29.20)
>DroSec_CAF1 3010 97 + 1
CGGCUGCUCUUCCGACCCGACGAACAUAAUCCCAUUAGGAACACCUCGUCGCGAUUUGGACGGAAAUUCCGCUGGCAACAGUUAGUCGUUA------UGUUCA
((((((...(((((.((((((((......(((.....))).....))))))......)).))))).....((((....))))))))))...------...... ( -27.50)
>DroSim_CAF1 2540 97 + 1
CGGCUGCUCUUCCGACCCGACGAACAUAAUCCCAUUAGGAACACCUCGUCGCGAUUUGGACGGAAAUUCCGCUGGCAACAGUUAGUCGUUA------UGUUCA
((((((...(((((.((((((((......(((.....))).....))))))......)).))))).....((((....))))))))))...------...... ( -27.50)
>DroEre_CAF1 2950 103 + 1
CGGCUGCUCCUCCAACCCGACGAACAUAAUCCCAUUAGGAACACCUCGUCGCGAUUUGGACGCACAUUCCGCUGGCAACAGUUAGUCGUUAGGUUCAUGUUCA
(((((((...(((((.(((((((......(((.....))).....)))))).)..))))).)).......((((....)))).)))))............... ( -26.10)
>DroYak_CAF1 3042 97 + 1
AGGCUGCUCUUCCGAGCCGACGAACAUAAUCCCAUUAGGAACACCUCGAUGCGAUUUGGACGGAAAUUCCGCUGGCAACAGUUAGUCGUUA------UGUUCA
.((((.(......)))))...((((((((((.(((((((....))).)))).))....(((((.....))((((....))))..))).)))------))))). ( -30.10)
>consensus
CGGCUGCUCUUCCGACCCGACGAACAUAAUCCCAUUAGGAACACCUCGUCGCGAUUUGGACGGAAAUUCCGCUGGCAACAGUUAGUCGUUA______UGUUCA
((((((.((((((((..((((((......(((.....))).....))))))....))))).)))......((((....))))))))))............... (-24.00 = -24.04 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:48 2006