Locus 7993

Sequence ID X_DroMel_CAF1
Location 19,887,551 – 19,887,646
Length 95
Max. P 0.657050
window13127

overview

Window 7

Location 19,887,551 – 19,887,646
Length 95
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 70.81
Mean single sequence MFE -29.47
Consensus MFE -12.78
Energy contribution -15.24
Covariance contribution 2.46
Combinations/Pair 1.10
Mean z-score -1.75
Structure conservation index 0.43
SVM decision value 0.26
SVM RNA-class probability 0.657050
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19887551 95 - 22224390
CGGCAUCAGCUGGCUAUGCCACGAGUGGGCCGAAGGACACUCCCGUCCUUCGUCCUCCAAAGUGGCAU----ACAGACAAACAAACCAACAGGCAGUCG
((((....((((..((((((((..(..((.((((((((......)))))))).))..)...)))))))----)))).).......((....))..)))) ( -36.80)
>DroSec_CAF1 2151 95 - 1
CGGCAUCAGCUGGCUACGCCACGAGUGGGCCGAAGGACACUCUCGUCCUUCGUCCUCCAAAGUGGCAU----AGAGACAAACAAACCAACAGGCAGUCG
((((....)))).(((.(((((..(..((.((((((((......)))))))).))..)...))))).)----)).(((.................))). ( -34.73)
>DroEre_CAF1 2134 80 - 1
CGACAUCAGCUGGCUACGCCCCGAGUGGGUCGAAGGACACCCUCGUCCUUCGUCCUGCAC-------------------AACAAACCAACUGGCGGUCG
((((.((((.(((...((...)).(..((.((((((((......)))))))).))..)..-------------------......))).))))..)))) ( -31.30)
>DroYak_CAF1 2145 99 - 1
CGGCAUCAGCUGGUUACGCCACCAGUGCGCCGAAGGACACUCUCGUCAUUCGUCCUCCAAACUGGCAUACAUACAGACAAACAAACCAACAGGCAGUCG
((((....((((((......))))))..((((.(((((.............))))).)...(((.........)))...............))).)))) ( -24.52)
>DroAna_CAF1 21980 77 - 1
CGCCCUCAGCUGG------------UGGCCCGAAGGACACUCUGCUCCUCAGUCA----GACAGGGAC----GGCGACAAACAGAC--ACCGGAUGAAA
.....(((.((((------------((((((....)...(((((((........)----).)))))..----)))(.....)...)--))))).))).. ( -20.00)
>consensus
CGGCAUCAGCUGGCUACGCCACGAGUGGGCCGAAGGACACUCUCGUCCUUCGUCCUCCAAACUGGCAU____ACAGACAAACAAACCAACAGGCAGUCG
((((....((((((...)))....(..((.((((((((......)))))))).))..).................................))).)))) (-12.78 = -15.24 +   2.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:47 2006