Locus 7988

Sequence ID X_DroMel_CAF1
Location 19,881,997 – 19,882,108
Length 111
Max. P 0.654488
window13104

overview

Window 4

Location 19,881,997 – 19,882,108
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.11
Mean single sequence MFE -28.30
Consensus MFE -17.82
Energy contribution -20.14
Covariance contribution 2.32
Combinations/Pair 1.07
Mean z-score -2.57
Structure conservation index 0.63
SVM decision value 0.25
SVM RNA-class probability 0.654488
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19881997 111 - 22224390
AUAUAGU---------AUAUAUAGGAUGUAUAGGAUGUAGGCGUGGUACUGAAUUUGCAUAUUCACAGAAAAGCAGGGCGACGCAACGCAAAAGUGUCAUAAAAAUUCUACAUUUCAAUG
.....((---------((((.....)))))).((((((((((((.(..(((..((((........))))....)))..).)))).((((....))))..........))))))))..... ( -24.60)
>DroSec_CAF1 35753 110 - 1
AUAUCGU---------AUAUAUAGGA-AUAUAGGAUGUGGGCGUGGCACUGAAUUUGCAUAUUUGCAGAAAAGCAGGGCGACGCAACGCAAAAGUGUCAUAAAAAUGCUACAUUUCAAUG
..(((.(---------((((......-))))).)))((((((((.((.(((..((((((....))))))....))).)).)))).((((....))))..........))))......... ( -30.90)
>DroSim_CAF1 26480 110 - 1
AUAUCGU---------AUAUAUAGGA-AUAUAGGAUGUGGGCGUGGCACUGAAUUUGCAUAUUUGCAGAAAAGCAGGGCGACGCAACGCAAAAGUGUCAUAAAAAUGCUACAUUUCAAUG
..(((.(---------((((......-))))).)))((((((((.((.(((..((((((....))))))....))).)).)))).((((....))))..........))))......... ( -30.90)
>DroEre_CAF1 13088 109 - 1
AUAUAGU---------AUACAUAGGA-GUAUAGGAUAUGGGCGUGGCA-AAAAUUUGCAUAUUUGCAGAAGAGCAACGCAACGCAACGCAAAAGUGUCAUAAAAAUUGUACAUUUCAAUG
.((((((---------((((......-))))..(((((..((((.((.-....((((((....))))))...((...))...)).))))....)))))......)))))).......... ( -22.30)
>DroYak_CAF1 11625 114 - 1
AUAUGGUACUAUACAUAUAUAUAGGA-GUAUAGGAUGUGGGCGUGGCGCUAAAUUUGCAUAUUUGCAGAAAAGCAGCG-----CAACGCAAAAGUGUCAUAAAAAUUCAACAUUUCAAUG
.((((..(((.(((((.(((((....-)))))..))))).((((.(((((...((((((....)))))).....))))-----).))))...)))..))))................... ( -32.80)
>consensus
AUAUAGU_________AUAUAUAGGA_GUAUAGGAUGUGGGCGUGGCACUGAAUUUGCAUAUUUGCAGAAAAGCAGGGCGACGCAACGCAAAAGUGUCAUAAAAAUUCUACAUUUCAAUG
..............................(..(((((((((((.((.(((..((((((....))))))....))).)).)))).((((....))))..........)))))))..)... (-17.82 = -20.14 +   2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:28 2006