Locus 7985

Sequence ID X_DroMel_CAF1
Location 19,879,800 – 19,879,892
Length 92
Max. P 0.997072
window13099

overview

Window 9

Location 19,879,800 – 19,879,892
Length 92
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 69.63
Mean single sequence MFE -35.10
Consensus MFE -18.39
Energy contribution -19.70
Covariance contribution 1.31
Combinations/Pair 1.08
Mean z-score -2.51
Structure conservation index 0.52
SVM decision value 2.79
SVM RNA-class probability 0.997072
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19879800 92 - 22224390
CCAGGAUCCGAAA------CAAAAAUAGUCAGCUAGCAA-----CGAGCUGACUGGAUCGGAUGCGACUUAU-----------------UAUGAGUCCCGAAAUCUGCCCGAUUAUUCAG
...(.((((((..------......(((((((((.....-----..)))))))))..)))))).)(((((..-----------------...)))))..((((((.....)))..))).. ( -25.60)
>DroSec_CAF1 33687 99 - 1
CCAGGAUCCGAAA------CAAAA----------AGCAC-----CGAGCUGAUUGGAUCGGAUCCGACUUAUGAGCUGCCCGCGUUGCUUAUGAGUCCCGAAAUCUGCCCGAUUAUUCAG
...((((((((..------(((..----------(((..-----...)))..)))..))))))))(((((((((((.((....)).)))))))))))..((((((.....)))..))).. ( -38.30)
>DroYak_CAF1 9342 120 - 1
CCAGGAUCCGGAUCCGAAACAAAAAGAGCCUGCUAGCACAGCAGCAAGCUGAUUGGGUCGGAUCCGACUUAUUAGGUGCCCGAGAUGCCGAUGAGUCCUGAAAGCUGCCAGAUUAUUCAG
.(((((..(((((((((..(((....(((.((((.((...)))))).)))..)))..))))))))).((((((.(((.........)))))))))))))).................... ( -41.40)
>consensus
CCAGGAUCCGAAA______CAAAAA_AG_C_GCUAGCAC_____CGAGCUGAUUGGAUCGGAUCCGACUUAU_AG_UGCCCG_G_UGC_UAUGAGUCCCGAAAUCUGCCCGAUUAUUCAG
...((((((((...............((....))(((..........))).......))))))))(((((((((((..........)))))))))))....................... (-18.39 = -19.70 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:23 2006