Locus 7984

Sequence ID X_DroMel_CAF1
Location 19,879,413 – 19,879,526
Length 113
Max. P 0.659378
window13098

overview

Window 8

Location 19,879,413 – 19,879,526
Length 113
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 89.17
Mean single sequence MFE -34.50
Consensus MFE -23.76
Energy contribution -25.57
Covariance contribution 1.81
Combinations/Pair 1.03
Mean z-score -2.06
Structure conservation index 0.69
SVM decision value 0.26
SVM RNA-class probability 0.659378
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19879413 113 - 22224390
GGCGAUGCCGGCAUUUUGGGCUGCAUAACAUUGCAAUUUAAAUGUUUUCAUUGCCCGGCUUAAUUUAUGGCUGCCGGAGGCCUGGCCAGGCCAAACGAAUCGAAUAUAAAAUA
..((((.(((((.....((((((((......)))).....((((....))))))))((((........))))))))).(((((....)))))......))))........... ( -39.30)
>DroSec_CAF1 33318 112 - 1
GGCGAUGCCGGCAUUUUGGGCUGAAUAACAUUGCAAUUUAAAUGUUUUCAUUGCCCGGCUUAAUUUAUGGCUGCCGGAGGCCUGGCU-GGCCAAACGAAUCGAACAUAAAAUA
..((((.(((((.....((((((((.((((((........))))))))))..))))((((........))))))))).((((.....-))))......))))........... ( -39.40)
>DroEre_CAF1 10642 107 - 1
GGCGAUGG-GGCAUUGUGGGCCGCAUAACAUUGCCAUUUAAAUGUUUUUAAUGCCUGGCUUAAUUUAUGGCUGCCGGAGGCCUGGCCA-----AACGAAUCGGACAUAAAAUA
..((((..-(((.....(((((((((((((((........))))))....))))(((((.............))))).))))).))).-----.....))))........... ( -30.02)
>DroYak_CAF1 8959 109 - 1
GGCGUUGGCGGCAUUUUGGUCUGCAUAACAUUGCAAUUUAAAUGUUUUCAUUGCCUGCCUUAAUUUAUGGCUGCCGGAGGCCUGGCCA----AAACGAAACGAAUAUAAAAUA
((((.(((..((((((..((.((((......))))))..))))))..))).)))).(((.........))).(((((....)))))..----..................... ( -29.30)
>consensus
GGCGAUGCCGGCAUUUUGGGCUGCAUAACAUUGCAAUUUAAAUGUUUUCAUUGCCCGGCUUAAUUUAUGGCUGCCGGAGGCCUGGCCA____AAACGAAUCGAACAUAAAAUA
((((((((.((((((.((((.((((......)))).)))))))))).)))))))).((((........))))(((((....)))))........................... (-23.76 = -25.57 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:22 2006