Locus 7980

Sequence ID X_DroMel_CAF1
Location 19,874,609 – 19,874,729
Length 120
Max. P 0.731559
window13091

overview

Window 1

Location 19,874,609 – 19,874,729
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.42
Mean single sequence MFE -33.26
Consensus MFE -30.12
Energy contribution -29.76
Covariance contribution -0.36
Combinations/Pair 1.13
Mean z-score -1.29
Structure conservation index 0.91
SVM decision value 0.43
SVM RNA-class probability 0.731559
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19874609 120 - 22224390
CAUUAAAUAACAAACGAGUUGCCGUUGCAUUAUUGAAUUAAACGCGAAGGACACCUCCUUGGCCGGUUAAUAAGCCAGGCGGAUCGCCAAUUUAUUGGCCAUUGUAUUUGACCAUGUGCA
..(((((((.(((..(((.((((.((((.(((......)))..)))).)).)).)))..(((((((((....)))).((((...))))........)))))))))))))))......... ( -31.70)
>DroSec_CAF1 28733 120 - 1
CAUCAAAUGACAAACGAGUUGCCGCUGCAUUAUUGAAUUAAACGCAGAGGACACCUCCUUGGCCGGUUAAUAAGCCAGGCGGAUCGCCAAUUUAUUGGCCAUUGUAUUUGGCCAUGUGCA
..(((((((.(((..(((.((((.((((.(((......)))..)))).)).)).)))..(((((((((....)))).((((...))))........)))))))))))))))......... ( -35.70)
>DroSim_CAF1 20191 120 - 1
CAUCAAAUGACAAACGAGUUGCCGCUGCAUUAUUGAAUUAAACGCGAAGGACACCUCCUUGGCCGGUUAAUAAGCCAGGCGGAUCGCCAAUUUAUUGGCCAUUGUAUUUGGCCAUGUGCA
.........(((..(((....(((((((.(((((((.......((.(((((....))))).))...)))))))))..))))).))).........((((((.......)))))))))... ( -34.20)
>DroEre_CAF1 6085 120 - 1
CAUCAAAUGACAAACGAGUUGCCGCUGCAUUAUUGAAUUAAGCGCAAAGUACACCUCCUUGGCUGGUUAAUAAGCCAGGCGGAUCGCCAAUUUAUUGGCCAUUGUAUUUGGCCAUGUGCA
..................((((.(((.((....)).....))))))).(((((((.(((.((((........))))))).)).............((((((.......))))))))))). ( -34.40)
>DroYak_CAF1 3436 120 - 1
CAUCAAAUGACAAACGAGUUGCCGCUGCAUUAUUGAAUUAAACGCAAAGGACACCUCCUUGGCUGGUUAAUAAGCCAGGCGGAUCGCCAAUUUAUUGGCCAUUGUAUUUGCCCAUGUGCA
...((((((.(((..((....(((((.................((.(((((....))))).))(((((....)))))))))).))(((((....)))))..))))))))).......... ( -30.30)
>consensus
CAUCAAAUGACAAACGAGUUGCCGCUGCAUUAUUGAAUUAAACGCAAAGGACACCUCCUUGGCCGGUUAAUAAGCCAGGCGGAUCGCCAAUUUAUUGGCCAUUGUAUUUGGCCAUGUGCA
..(((((((.(((..((....(((((((.(((((((.......((.(((((....))))).))...)))))))))..))))).))(((((....)))))..))))))))))......... (-30.12 = -29.76 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:16 2006