Locus 7978

Sequence ID X_DroMel_CAF1
Location 19,874,169 – 19,874,268
Length 99
Max. P 0.967110
window13089

overview

Window 9

Location 19,874,169 – 19,874,268
Length 99
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.98
Mean single sequence MFE -27.39
Consensus MFE -9.90
Energy contribution -14.30
Covariance contribution 4.40
Combinations/Pair 1.11
Mean z-score -2.82
Structure conservation index 0.36
SVM decision value 1.61
SVM RNA-class probability 0.967110
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19874169 99 + 22224390
-----UAAUAUCUUACAAAAUAAAAAGACAAC-UUG---------------UUUAAUAAAUAUUUGUGUUUCCCAGGACACAGGACAAAGUAAAUAAGCUGCAUUAAAUAUGGAAAGGUA
-----...((((((.(............((.(-(((---------------((((.......((((((((......))))))))......)))))))).))(((.....)))).)))))) ( -15.92)
>DroSec_CAF1 28295 114 + 1
---GAUAAAAUCUUGCAA-AUAA-AAGGCGAC-UUGUUUUGCCUUUCCAUGUUUAAUAAAUAUUUGUGUUUCCCAGGACAGAGCACAAAGUAAAUAAGCUGCAUUAAAUAUGGAAAGGUA
---...........((((-(...-(((....)-))..)))))(((((((((((((((.....((((((((((....))...))))))))(((.......))))))))))))))))))... ( -32.70)
>DroSim_CAF1 19753 115 + 1
---GAUAAAAUCUUGCAAAAUAA-AAGGCGAC-UUGUUUUGCCUUUCCAUGUUUAAUAAAUAUUUGUGUUUCCCAGGACAGAGCACAAAGUAAAUAAGCUGCAUUAAAUAUGGAAAGGUA
---...........((((((((.-.((....)-)))))))))(((((((((((((((.....((((((((((....))...))))))))(((.......))))))))))))))))))... ( -33.20)
>DroEre_CAF1 5658 118 + 1
UCAGACAUUAACUUGCAUAAUAC-AAGUCGGU-UUGUUUUGCCUUUCCAUGCUUAAUAAAUACUUGUCCUGCCCAGGACAGAGCACCAAAUAAAUAAGCUGCCUAAUAUGUGGAAAGGUA
.(((((....(((((.......)-))))..))-)))...(((((((((((.............(((((((....)))))))(((.............))).........))))))))))) ( -31.72)
>DroYak_CAF1 2989 119 + 1
CCAGGCAAUAUCUUGCAUAAUAA-AUGUCGAUGUUGUUUUGCCAUUCCAAGUUUAAUAAAUAUUUGUGUUUCCCAGGACGGAGCACCAAAUAAAUAAGCUGCCUAAAAUAUGGAAAGUUA
..((((((((((..((((.....-)))).)))))))))).....(((((((((((.....((((((((((((.......)))))).))))))..))))))..........)))))..... ( -23.40)
>consensus
___GAUAAUAUCUUGCAAAAUAA_AAGGCGAC_UUGUUUUGCCUUUCCAUGUUUAAUAAAUAUUUGUGUUUCCCAGGACAGAGCACAAAGUAAAUAAGCUGCAUUAAAUAUGGAAAGGUA
.......................................((((((((((((((((((.....(((((.((....)).)))))(((..............))))))))))))))))))))) ( -9.90 = -14.30 +   4.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:14 2006