Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,871,807 – 19,871,913 |
Length | 106 |
Max. P | 0.500000 |
Location | 19,871,807 – 19,871,913 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.60 |
Mean single sequence MFE | -32.45 |
Consensus MFE | -21.19 |
Energy contribution | -21.25 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.19 |
Mean z-score | -1.58 |
Structure conservation index | 0.65 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19871807 106 + 22224390 AUAAUAAGUGAAAAAGUGGCCGACCUGCGGGACAUUUCUCCUGCACUUAAUCUACGUCGAAUGGCCGGGAAAAGAUGGCC--------------AGGGACGUCGAAGGACAUUGCCAACU ................((((...(((((((((......))))))......((.(((((...((((((........)))))--------------)..))))).))))).....))))... ( -34.40) >DroSec_CAF1 26022 112 + 1 AUAAUAAGUGGAAAAGUGG--------CGGGACAUUUCUCCUGCACUUAAUCUACGUCGAAUGGCCGGGAAAAGAUGGACGAUGAAGAUGAAGAAAGGACGUCGAAGGACAUUGCCAACU ........(((....((.(--------(((((......)))))).(((.((((.(((((.....(((........))).))))).)))).))).....))(((....)))....)))... ( -29.00) >DroSim_CAF1 17168 106 + 1 AUAAUAAGUGGAAAAGUGGCCGACCUGCGGGACAUUUCUCCUGCACUUAAUCUACGUCGAAUGGCCGGGAAAAGAUGGCC--------------ACGGACGUCGAAGGACAUUGCCAACU ........(((...((((.((....(((((((......))))))).....((.(((((...((((((........)))))--------------)..))))).)).)).)))).)))... ( -35.50) >DroYak_CAF1 1108 106 + 1 AUAAUGAGUGGCGAAGCAGCAGACCUGCGGCACAUUUCUCCUGCACCUAAUCUGCAUCGAAUGGCUGGGAAAAGAUGGCC--------------AGGAAAGUCGAAGGACAUUGCCAGCU ........((((((.((((.....))))(((.(((((.((((...((...((......))..))..))))..))))))))--------------......(((....))).))))))... ( -30.90) >consensus AUAAUAAGUGGAAAAGUGGCCGACCUGCGGGACAUUUCUCCUGCACUUAAUCUACGUCGAAUGGCCGGGAAAAGAUGGCC______________AGGGACGUCGAAGGACAUUGCCAACU .......(..(....((((......(((((((......)))))))......)))).......(((((........)))))....................(((....))).)..)..... (-21.19 = -21.25 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:08 2006