| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,865,542 – 19,865,646 |
| Length | 104 |
| Max. P | 0.934941 |
| Location | 19,865,542 – 19,865,646 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 79.80 |
| Mean single sequence MFE | -24.33 |
| Consensus MFE | -19.27 |
| Energy contribution | -19.17 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.934941 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19865542 104 - 22224390 UAA----AAAACUUAAACGGCACCUUGGGCUGGCAGUUCAAUGUGAGAAGGCAAAUAUACUUAUAAAUAGGACGGGCCCAAGGCUCUGGAGUUAGUAGAAAAAGCCGC ...----..........((((.(((((((((.((..(((.....)))...)).......((((....))))...))))))))).((((.......))))....)))). ( -28.80) >DroSec_CAF1 23318 91 - 1 AAAUGUAAAAACUUAAACGGCACCUCAGGCUGGCAGUUUAAUGUGAGAAGGGAAACAGACUUAUAAAUAGGACGGGCCCAAGGUUCUGGAA----------------- .................(((.((((..((((.((.......((((((...(....)...)))))).....).).))))..)))).)))...----------------- ( -22.10) >DroSim_CAF1 14405 91 - 1 AAAUCUUAAAACUUAAACGGCACCUCAGGCUGGCAGUUUAAUGUGAGAAGGGAAACAUACUUAUAAAUAGGACGGGCCCAAGGUUCUGGAA----------------- .................(((.((((..((((.((.......((((((...(....)...)))))).....).).))))..)))).)))...----------------- ( -22.10) >consensus AAAU_U_AAAACUUAAACGGCACCUCAGGCUGGCAGUUUAAUGUGAGAAGGGAAACAUACUUAUAAAUAGGACGGGCCCAAGGUUCUGGAA_________________ .................(((.((((..((((....((((..((((((...(....)...))))))....)))).))))..)))).))).................... (-19.27 = -19.17 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:06 2006