Locus 7971

Sequence ID X_DroMel_CAF1
Location 19,863,647 – 19,863,767
Length 120
Max. P 0.759158
window13078

overview

Window 8

Location 19,863,647 – 19,863,767
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 90.34
Mean single sequence MFE -46.73
Consensus MFE -40.86
Energy contribution -41.20
Covariance contribution 0.34
Combinations/Pair 1.08
Mean z-score -2.03
Structure conservation index 0.87
SVM decision value 0.50
SVM RNA-class probability 0.759158
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19863647 120 + 22224390
GCCUCUGUCUUCCGGAGAUCGGGUUAUUCGAACUCUGAGCUUGUGGAUUCUGGACUCUGAAUUCUGGAUUCCGGAUCGGAGGCAGAGAUCCGAGAGCUGCACACCCAGACGGCUGGCACU
(((.((((((..(((((.((((.....)))).)))))(((((.(((((((((..((((((..(((((...))))))))))).)))).))))).)))))........))))))..)))... ( -50.40)
>DroSec_CAF1 21475 112 + 1
GCCCCCGUCUUCAGGAGAUCGGG-UAUUCGAACUCUGAGUUUGUGGAUUCUGGACUCU-------GGAUUCUGGAUCGGAGGCAGAGAUCCGAGAGCUGCAGACCCAGACGGCUGGCACU
(((.((((((((((.((.((((.-...)))).))))))(((((..(.(((((((((((-------(..(((((...))))).))))).))).)))))..)))))..))))))..)))... ( -47.00)
>DroSim_CAF1 12545 112 + 1
GCCUCCUUCUUCAGGAGAUCGGG-UAUUCGAACUCUGAGUUUGUGGAUUCUGGACUCC-------GGAUUCCGGAUCGGAGGCAGAGAUCCGAGUGCUGCAGACCCAGACGGCUGGCACU
..(((((.....))))).(((((-(.(((...((((((...(.((((.(((((...))-------))).)))).)))))))...)))))))))((((..(((.((.....))))))))). ( -42.80)
>consensus
GCCUCCGUCUUCAGGAGAUCGGG_UAUUCGAACUCUGAGUUUGUGGAUUCUGGACUCU_______GGAUUCCGGAUCGGAGGCAGAGAUCCGAGAGCUGCAGACCCAGACGGCUGGCACU
(((.((((((...((((.((((.....)))).))))(.(((((..(..((((((.(((.......))).))))))(((((........)))))...)..))))).)))))))..)))... (-40.86 = -41.20 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:04 2006