| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,863,487 – 19,863,607 |
| Length | 120 |
| Max. P | 0.872403 |
| Location | 19,863,487 – 19,863,607 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.10 |
| Mean single sequence MFE | -43.40 |
| Consensus MFE | -38.32 |
| Energy contribution | -38.10 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.872403 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19863487 120 + 22224390 AUUUUCGCUUUUGUAUUUGCCAAUUGGCGCUGAUUAAAGCCGCCCGAGUCGAUGGGCCAUAAUUAAAAGAUGGCCUAAUGAGAGGCGAGGCGAGUACGUCUCGAGUUGGCUGGGGGUCAA ......(((((.((...((((....))))...)).)))))..(((.((((((((((((((.........))))))).........(((((((....))))))).))))))).)))..... ( -45.30) >DroSec_CAF1 21316 119 + 1 AUUUUCGCUUUUGUAUUUGCCAAUUGGCGCUGAUUAAAGCCGUCCGAGUCGAUGGGCCAUAAUUAAAAGAUGGCCUAAUGAGAGGCGAUGGGGCAACGUCUCGAGUUGGCUGG-GGUCAA ......(((((.((...((((....))))...)).))))).((((.((((((((((((((.........))))))).....((((((.((...)).))))))..))))))).)-)).).. ( -40.70) >DroSim_CAF1 12386 119 + 1 AUUUUCGCUUUUGUAUUUGCCAAUUGGCGCUGAUUAAAGCCGCCCGAGUCGAUGGGCCAUAAUUAAAAGAUGGCCUAAUGAGAGGCGAUGGGGCAACGUCUCGAGUUGGCUGG-GGUCAA ......(((((.((...((((....))))...)).))))).((((.((((((((((((((.........))))))).....((((((.((...)).))))))..))))))).)-)))... ( -44.20) >consensus AUUUUCGCUUUUGUAUUUGCCAAUUGGCGCUGAUUAAAGCCGCCCGAGUCGAUGGGCCAUAAUUAAAAGAUGGCCUAAUGAGAGGCGAUGGGGCAACGUCUCGAGUUGGCUGG_GGUCAA ......(((((.((...((((....))))...)).))))).((((.((((((((((((((.........))))))).....((((((.........))))))..))))))).).)).).. (-38.32 = -38.10 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:03 2006