Locus 7969

Sequence ID X_DroMel_CAF1
Location 19,859,926 – 19,860,043
Length 117
Max. P 0.638345
window13076

overview

Window 6

Location 19,859,926 – 19,860,043
Length 117
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 93.16
Mean single sequence MFE -30.50
Consensus MFE -27.47
Energy contribution -27.37
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -1.80
Structure conservation index 0.90
SVM decision value 0.22
SVM RNA-class probability 0.638345
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19859926 117 - 22224390
AGCUUGUAUGUGCCAAUUGUGGCAUAACAUUAUUUCAGUAAACAUUAUGACUGCUUCGUUCUUGGAAUUAUUAAAGUUGCAAGUGCGAUUGCCACAGGCUAUUGAAUUUUGCGACUG
(((((((.(((((((....)))))))..........................((.((((.((((.((((.....)))).)))).))))..)).)))))))................. ( -29.50)
>DroSec_CAF1 17729 117 - 1
AGUUUGUGCGUGCCAACUGUGGCAUAACAUUAUUUCAAUAAACAUUAUGAUUGCUUCGUUUCUAGAACUAUUAAAGUUGCAAGUGCGAUUGCCACAGGCUAUCGAAUUUUGCGACUG
(((((((..((((((....)))))).))..................((((.....)))).....))))).....(((((((((..((((.(((...))).))))...))))))))). ( -31.00)
>DroSim_CAF1 9651 117 - 1
AGUUUGUGCGUGCCAACUGUGGCAUAACAUUAUUUCAAUAAACAUUAUGAUUGCUUCGUUUCUAGAACUAUUUAAGUUGCAAGUGCGAUUGCCACAGGCUAUCGAAUUUUGCGACUG
(((((((..((((((....)))))).))..................((((.....)))).....))))).....(((((((((..((((.(((...))).))))...))))))))). ( -31.00)
>consensus
AGUUUGUGCGUGCCAACUGUGGCAUAACAUUAUUUCAAUAAACAUUAUGAUUGCUUCGUUUCUAGAACUAUUAAAGUUGCAAGUGCGAUUGCCACAGGCUAUCGAAUUUUGCGACUG
(((((((..((((((....)))))).))..................((((.....)))).....))))).....(((((((((..((((.(((...))).))))...))))))))). (-27.47 = -27.37 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:02 2006