| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,859,421 – 19,859,514 |
| Length | 93 |
| Max. P | 0.963046 |
| Location | 19,859,421 – 19,859,514 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 76.74 |
| Mean single sequence MFE | -22.94 |
| Consensus MFE | -12.60 |
| Energy contribution | -14.35 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.55 |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.963046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19859421 93 + 22224390 UCCAUUAAAUAAGCACGCAAUUAAUUGUGGCAGCCAUGACAGGC-GUGGCUUGCCACCAAUUAAGUGGAAUACUAUAUGGCUAUAUCGCUAUAU ((((((......(....)...(((((((((((((((((.....)-))))).))))).)))))))))))).....(((((((......))))))) ( -32.10) >DroSec_CAF1 17256 80 + 1 GCGAUUAAAUAAGCACGCAAUUAAUUGUGGCAGCCAUGACAGGC-GUGGCUUGCCACCAAUUAAGAGGAAUACUAUAUGGC------------- (((............)))..((((((((((((((((((.....)-))))).))))).))))))).................------------- ( -24.60) >DroAna_CAF1 16949 81 + 1 GCGAUAAAAUAAACAUGCAAUUAAUUGCGACAACC-UGACACCCUGCAACUUGCAACCAAUUAAGGAGCCUGCCACUAGCCU------------ ((.............(((((....)))))....((-(.......(((.....)))........))).)).............------------ ( -9.56) >DroSim_CAF1 9170 85 + 1 GCGAUUAAAUAAGCACGCAAUUAAUUGUGGCAGCCAUGACAGCC-GUGGCUUGCCACCAAUUAAGAGGAAUACUAUAUGGCUAUAU-------- ...........(((......((((((((((((((((((.....)-))))).))))).))))))).((.....)).....)))....-------- ( -25.50) >consensus GCGAUUAAAUAAGCACGCAAUUAAUUGUGGCAGCCAUGACAGCC_GUGGCUUGCCACCAAUUAAGAGGAAUACUAUAUGGCU____________ ....................(((((((((((((((((........))))).))))).))))))).............................. (-12.60 = -14.35 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:01 2006