| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,857,412 – 19,857,511 |
| Length | 99 |
| Max. P | 0.635142 |
| Location | 19,857,412 – 19,857,511 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 75.76 |
| Mean single sequence MFE | -28.53 |
| Consensus MFE | -16.04 |
| Energy contribution | -17.27 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.635142 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19857412 99 + 22224390 ACGUGGCGCGGGACAGGCAAACAUGUUUGUAUAUUUGUUUAAGCCGCGAGUUAAAACGAGCCAUGUCCUGUGCCCAAAGAACAUCAGCAUCAACAUUCG ..(.((((((((((((((..(((....)))....((((((.(((.....))).))))))))).))))))))))))........................ ( -32.20) >DroSec_CAF1 15240 99 + 1 ACGUGGCGCGGGGCAGGCAAACAUGUUUGUAUAUUUGUUUAAGCCGCGAGUUAAAACGAGCCAUGUCCUGUGCCCAAAGAACAUCAGCAUCAACAUUCG ..(.((((((((((((((..(((....)))....((((((.(((.....))).))))))))).))))))))))))........................ ( -31.60) >DroAna_CAF1 15379 82 + 1 AUGGCGUGGAGGACUAACUACCAUGUUUGUGUAUUUGUUUUAGCCGCGAGUUAAAACGAGCCAUGGC----AGCCAAACAACAUC-------------C .((((((((((......)).))))..........((((((((((.....))))))))))((....))----.)))).........-------------. ( -21.80) >consensus ACGUGGCGCGGGACAGGCAAACAUGUUUGUAUAUUUGUUUAAGCCGCGAGUUAAAACGAGCCAUGUCCUGUGCCCAAAGAACAUCAGCAUCAACAUUCG ....((((((((((((((......))))))...(((((((.(((.....))).)))))))......))))))))......................... (-16.04 = -17.27 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:52:00 2006