Locus 7966

Sequence ID X_DroMel_CAF1
Location 19,851,916 – 19,852,011
Length 95
Max. P 0.999484
window13073

overview

Window 3

Location 19,851,916 – 19,852,011
Length 95
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.62
Mean single sequence MFE -29.58
Consensus MFE -15.72
Energy contribution -16.92
Covariance contribution 1.20
Combinations/Pair 1.21
Mean z-score -3.06
Structure conservation index 0.53
SVM decision value 3.64
SVM RNA-class probability 0.999484
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19851916 95 + 22224390
GCCCCUUUUUGCCUAUUUUAUGGCCGCCAUUAAAGUUUACUUAGU--GGCCGGCCAUGCAACC----CAGCA-GAAA-------UCC----------CCGAAAAGAGGCGA-CACCAACC
(((.(((((((...(((((((((((((((((((.......)))))--)).)))))))((....----..)).-))))-------)..----------.))))))).)))..-........ ( -34.00)
>DroSec_CAF1 9659 95 + 1
GCCCCUUUUUGCCUAUUUUAUGGCCGCCAUUAAAGUUUACUUAGU--GGCCGGCCAUGCAACC----CAGCA-GAAA-------UCC----------CCGAAAAGAGGCGA-CACAAACC
(((.(((((((...(((((((((((((((((((.......)))))--)).)))))))((....----..)).-))))-------)..----------.))))))).)))..-........ ( -34.00)
>DroMoj_CAF1 11076 107 + 1
GAC---UUUUGCCUAUUUUAUGAGCGUCAUAAAAGUUUACUUAGUGUGGCCAACCGUGCAAUGGCCGUGGCCAAAAAGUUGGCCACG----------UCGACAAGAAUCCACCACAAACU
(((---....(((..(((((((.....))))))).........(..(((....)))..)...))).((((((((....)))))))))----------))..................... ( -31.20)
>DroAna_CAF1 8958 102 + 1
GCCCCUUUUUGCCUAUUUUAUGGCUUCCAUAAAAGUUUACUUAGU--GGCCGGUCAUGCAACC----CAGCG-AAAA-------UCCCUCCCUCCUCCCGAAAAAAGACAA-AA---AUG
.....((((((.((.((((((((((.((((..(((....))).))--))..))))))((....----..)).-....-------................)))).)).)))-))---).. ( -14.70)
>DroSim_CAF1 5794 95 + 1
GCCCCUUUUUGCCUAUUUUAUGGCCGCCAUUAAAGUUUACUUAGU--GGCCGGCCAUGCAACC----CAGCA-GAAA-------UCC----------CCGAAAAGAGGCGA-CACCAACC
(((.(((((((...(((((((((((((((((((.......)))))--)).)))))))((....----..)).-))))-------)..----------.))))))).)))..-........ ( -34.00)
>consensus
GCCCCUUUUUGCCUAUUUUAUGGCCGCCAUUAAAGUUUACUUAGU__GGCCGGCCAUGCAACC____CAGCA_GAAA_______UCC__________CCGAAAAGAGGCGA_CACAAACC
(((.(((((((........(((((((((....(((....))).....)).)))))))((..........))...........................))))))).)))........... (-15.72 = -16.92 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:59 2006