Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 19,851,707 – 19,851,801 |
Length | 94 |
Max. P | 0.623655 |
Location | 19,851,707 – 19,851,801 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 81.65 |
Mean single sequence MFE | -23.02 |
Consensus MFE | -16.82 |
Energy contribution | -17.64 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.06 |
Mean z-score | -1.60 |
Structure conservation index | 0.73 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623655 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19851707 94 + 22224390 CACAGCAGCUGCA-AAAUAUGCUGCUAAGGAUUGGCCGUCGUUUC---------CUUCUCGCUGAUCCUGCUCCUUACUGUUUAUAUCCUUAUUCGUGGUCUUU (((((((((....-......)))))).(((((..((.........---------......))..)))))..........................)))...... ( -22.36) >DroSec_CAF1 9450 94 + 1 CACAGCAGCUGCA-AAAUAUGCUGCUAAGGAUUGGCCGUCGUUUC---------CUACUCGCUGAUCCUGCUCCUUACUGUUUAUAUCCUUAUUCGUGGUCUUU (((((((((....-......)))))).(((((..((.((......---------..))..))..)))))..........................)))...... ( -23.10) >DroAna_CAF1 8765 92 + 1 CACAGCAGCUGCAUAAAAAUGCGGCUAGGGAUUGCUCAUCCUUUCGGCUCUGCUCCUUUCUCUGAUCCUGCGGC------------UCCUUAUUCGAGGUCUUU ....((((((((((....)))))))((((((..((....((....))....)).....))))))....)))(((------------..(......)..)))... ( -23.50) >DroSim_CAF1 5603 94 + 1 CACAGCAGCUGCA-AAAUAUGCUGCUAAGGAUUGGCCGUCGUUUC---------CUACUCGCUGAUCCUGCUCCUUACUGUUUAUAUCCUUAUUCGUGGUCUUU (((((((((....-......)))))).(((((..((.((......---------..))..))..)))))..........................)))...... ( -23.10) >consensus CACAGCAGCUGCA_AAAUAUGCUGCUAAGGAUUGGCCGUCGUUUC_________CUACUCGCUGAUCCUGCUCCUUACUGUUUAUAUCCUUAUUCGUGGUCUUU (((((((((...........)))))).(((((((((........................)))))))))..........................)))...... (-16.82 = -17.64 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:58 2006