| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,850,313 – 19,850,433 |
| Length | 120 |
| Max. P | 0.997128 |
| Location | 19,850,313 – 19,850,433 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.56 |
| Mean single sequence MFE | -44.80 |
| Consensus MFE | -22.67 |
| Energy contribution | -23.90 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.51 |
| SVM decision value | 2.80 |
| SVM RNA-class probability | 0.997128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19850313 120 - 22224390 AAUCGUAGUCCUGAAACCCUUCAGCUGAAAGUCCGCUUAGCUGGGGGGCGGAGAUGGCAAGUCAAGGGCCUCUAAUUGACUUGCCAAUGGGAAAGGAUGACCGAGGAUUGGACACACCAC ..(((..(((((....((((((((((((........))))))))))))......(((((((((((..........))))))))))).......)))))...)))....(((.....))). ( -44.90) >DroSec_CAF1 8065 119 - 1 AGCCGUAGUCCUGAAACCCUUCAGCUGAAAGUCCGCUUAGCUGGG-GGCGGAGGUGGCAAGUCAAGUGCCUCUAAUUGACUUGCCAAUGGGAAAGGAUGGCCGAGGAUUGGACACACCAC .(((((..((((....((((((((((((........)))))))))-)).)....(((((((((((..........)))))))))))..))))....))))).......(((.....))). ( -45.20) >DroAna_CAF1 7168 99 - 1 --CCUUUUUCGGGAAGCCCUUGAG-------------------GGCAGCGUCGAGGGCGACUCAAGUGCUCCUAAUUGACUUGCCAAUGAAAAAGGAUUGGCGGGGAUUGGAGGCGCAGG --(((.....(((..((((((((.-------------------(....).))))))))..)))..((((..((((((..(((((((((........)))))))))))))))..))))))) ( -44.30) >consensus A_CCGUAGUCCUGAAACCCUUCAGCUGAAAGUCCGCUUAGCUGGG_GGCGGAGAUGGCAAGUCAAGUGCCUCUAAUUGACUUGCCAAUGGGAAAGGAUGGCCGAGGAUUGGACACACCAC .......((((.....((.(((((((((........))))))))).))(((....((((((((((..........))))))))))..(....).......)))......))))....... (-22.67 = -23.90 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:57 2006