Locus 7961

Sequence ID X_DroMel_CAF1
Location 19,846,415 – 19,846,526
Length 111
Max. P 0.771882
window13063

overview

Window 3

Location 19,846,415 – 19,846,526
Length 111
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 75.92
Mean single sequence MFE -31.32
Consensus MFE -17.05
Energy contribution -16.80
Covariance contribution -0.25
Combinations/Pair 1.27
Mean z-score -2.04
Structure conservation index 0.54
SVM decision value 0.53
SVM RNA-class probability 0.771882
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19846415 111 - 22224390
CUUUAGCCGGGCUCAACUUUUGUUAUGCUCGCUUAGCUCCGGCUAAGGAGUCUUCAUCCGAGUUCUAAGAAAUUCCAAGUCUGCGACUGCCCAGC---UAUUUUAG--CACAUUUC
...((((.((((..(((((.((....((((.((((((....))))))))))...))...))))).............((((...)))))))).))---))......--........ ( -29.70)
>DroSec_CAF1 4366 111 - 1
CUUUAGCCGGGCUCAACUUUUGUUAUGCUCGCUUAGCUCCGGCUAAGGAGUCUGCAUCCGAGUUCUAAGAAAUUCCAAGUCGGCGACUGCCCAGC---UAUUCCAG--CACAUUUC
...((((.((((........(((...((((.((((((....))))))))))..))).((((.((..((....))..)).)))).....)))).))---))......--........ ( -33.50)
>DroAna_CAF1 3981 99 - 1
CCUUGGACGAGCUCAACUUUUGUUAUGCUCGCUUAGCUC----------GUCCGCCCCUCAAUGGAAGGAUAU-------AGACGAAAGUCUGGCAUAUACUCCCAUAUACACUGC
....(((((((((.(((....)))..(....)..)))))----------))))........((((.((.((.(-------((((....)))))..))...)).))))......... ( -28.30)
>DroSim_CAF1 978 111 - 1
CUUUAGCCGGGCUCAACUUUUGUUAUGCUCGCUUAGCUCCGGCUAAGGAGUCUGCAUCCGAGUUCUAAGAAAUUCUAAGUCGGCGACUGCCCAGC---UAUUCCAG--CACAUUUC
...((((.((((........(((...((((.((((((....))))))))))..))).((((.((..((....))..)).)))).....)))).))---))......--........ ( -33.80)
>consensus
CUUUAGCCGGGCUCAACUUUUGUUAUGCUCGCUUAGCUCCGGCUAAGGAGUCUGCAUCCGAGUUCUAAGAAAUUCCAAGUCGGCGACUGCCCAGC___UAUUCCAG__CACAUUUC
....((.(((((..(((....)))..)))))))..(((((......)))))(((.....(((((......)))))......(((....))))))...................... (-17.05 = -16.80 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:50 2006