| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,845,992 – 19,846,112 |
| Length | 120 |
| Max. P | 0.764209 |
| Location | 19,845,992 – 19,846,112 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.24 |
| Mean single sequence MFE | -23.21 |
| Consensus MFE | -15.02 |
| Energy contribution | -16.13 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.764209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19845992 120 - 22224390 CUGAUUCUGGGAAACUGGCUCCGCCGAGUGUAUUCGACUAUGCGAUACCUCUUACCCGCAGAUCAGUCAACAAAUACCUAUGUGACAGCUACCUCUACUUACUAAUAGUAUUCACAUCCA ((((((.((((.....(((...)))(((.((((.((......)))))))))...))))..)))))).............((((((..((((..............))))..))))))... ( -26.34) >DroSec_CAF1 3964 100 - 1 CUGAUUCCGGUUAUCUGGCUUCGCCGAGUGAAUUCGACUGUGCGAUACCCAUUACCCGCAGCUCAGUCAACUA---CU-----------------UAUUUACUAAUAAUAUUCACAUCCC ..((..((((....))))..)).....((((((..(((((((((............))))...))))).....---.(-----------------((((....))))).))))))..... ( -21.20) >DroSim_CAF1 580 100 - 1 CUCAUUCCGGGUAUCUGGCUUCGCCGAGUGAAUUCGACUAUGCGAUACCUAUUACCCGCAGCUCAGUCAACUA---CU-----------------UAUUUACUGAUAAUAUUCACAUCCC .......((((((...((..((((..(((.......)))..))))..))...))))))....(((((.((...---..-----------------..)).)))))............... ( -22.10) >consensus CUGAUUCCGGGUAUCUGGCUUCGCCGAGUGAAUUCGACUAUGCGAUACCUAUUACCCGCAGCUCAGUCAACUA___CU_________________UAUUUACUAAUAAUAUUCACAUCCC ((((((.((((((...((..((((..(((.......)))..))))..))...)))))).)).))))...................................................... (-15.02 = -16.13 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:49 2006