Locus 7959

Sequence ID X_DroMel_CAF1
Location 19,845,824 – 19,845,926
Length 102
Max. P 0.553004
window13061

overview

Window 1

Location 19,845,824 – 19,845,926
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 72.24
Mean single sequence MFE -27.63
Consensus MFE -12.72
Energy contribution -13.39
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.35
Structure conservation index 0.46
SVM decision value 0.04
SVM RNA-class probability 0.553004
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19845824 102 + 22224390
AAGCACAUAAAAAAAGGCCGAGUGGGCCACCAGUUCGGUUGGAACUUAAUGUGGAUAUGUUUGGGUGAACACCCAACCUGUCGUGGUUGCACUCCCCAUAGC
...............((..(((((((((((.(((((.....))))).......((((.(((.((((....))))))).)))))))))).))))).))..... ( -31.00)
>DroSec_CAF1 3811 77 + 1
AAGCACAUAAA-AAAGGCUGAGU--------------------CCUUGAUGUGGAUAUGUUUGGGUGAA--CCCAACCUGGCGUGGUUGGGGAGU--GCAAC
..((((.....-..((((...((--------------------((.......))))..)))).......--(((((((......)))))))..))--))... ( -25.40)
>DroSim_CAF1 427 77 + 1
AAGCACAUAAA-AAAGGCUGAGU--------------------CCUUGAUGUGGAUAUGUUAGGGUGAA--CCCAACCUGGCGUGGUUGGGGAGU--GCAAC
..((((.....-...........--------------------(((((((((....)))))))))....--(((((((......)))))))..))--))... ( -26.50)
>consensus
AAGCACAUAAA_AAAGGCUGAGU____________________CCUUGAUGUGGAUAUGUUUGGGUGAA__CCCAACCUGGCGUGGUUGGGGAGU__GCAAC
...(((((.....(((............................))).)))))..................(((((((......)))))))........... (-12.72 = -13.39 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:49 2006