| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,843,917 – 19,844,037 |
| Length | 120 |
| Max. P | 0.780999 |
| Location | 19,843,917 – 19,844,037 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.56 |
| Mean single sequence MFE | -40.27 |
| Consensus MFE | -33.05 |
| Energy contribution | -34.50 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.780999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19843917 120 - 22224390 ACCCACUUACAUCUUACGUGAACGGGGUAUGAAAAGCGGAAACUUUCGGCGAAUUUCGCAGAAAACUCCAUCGCCUGGAGAACGAAUGUUUGGCUGGGGGCUAUCUCCGAUGGCCCUGCA ((((..((((.......))))...))))......(((.(((...(((((((.....)))......(((((.....)))))..))))..))).))).(((((((((...)))))))))... ( -41.20) >DroSim_CAF1 2683 120 - 1 ACCCACUUACAUCUUACGUGGACGGGGUAUGAAAAGCAGAAACUUUCGGCGAAUUUCGCAGCAAACUCCAUCGCCUGGAGACCGAAAGUUUGGCCGGGGGCUAUCUCCGAUGGCCCUGCA ((((..((((.......))))...)))).......((((((((((((((((.....)))......(((((.....)))))..)))))))))(((((((((....))))..))))))))). ( -43.90) >DroYak_CAF1 24993 109 - 1 ACCCACUUAUAUCUUACGUGA-----------CAUGCGGAAACUUUCGGCCAAUUUUGCAGCAAACUCCAUCGCCUGGAGCACGAAAGUUUGCCUGCGGGCUAUCUCCGAUGGCCCUGGA ..(((................-----------...(((((((((((((((.......))......(((((.....)))))..))))))))).)).))((((((((...))))))))))). ( -35.70) >consensus ACCCACUUACAUCUUACGUGAACGGGGUAUGAAAAGCGGAAACUUUCGGCGAAUUUCGCAGCAAACUCCAUCGCCUGGAGAACGAAAGUUUGGCUGGGGGCUAUCUCCGAUGGCCCUGCA ((((..((((.......))))...))))...........((((((((((((.....)))......(((((.....)))))..))))))))).((..(((((((((...))))))))))). (-33.05 = -34.50 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:48 2006