Locus 7956

Sequence ID X_DroMel_CAF1
Location 19,832,090 – 19,832,201
Length 111
Max. P 0.832817
window13058

overview

Window 8

Location 19,832,090 – 19,832,201
Length 111
Sequences 4
Columns 117
Reading direction forward
Mean pairwise identity 72.24
Mean single sequence MFE -27.60
Consensus MFE -21.06
Energy contribution -21.25
Covariance contribution 0.19
Combinations/Pair 1.30
Mean z-score -1.32
Structure conservation index 0.76
SVM decision value 0.72
SVM RNA-class probability 0.832817
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19832090 111 + 22224390
CAUGGCUAUAUUGCAGC-UCAGCAGUUACUUAGUUUGCACAAUGGCCUC---UGUCGACA--UCGCGGUCGACGUCGUCUAAGUGCAAUCGAUAUAUGCUAAUAAAACUGUCCCACA
..(((((((((((..((-(.((......)).)))((((((...(((..(---.((((((.--.....)))))))..)))...)))))).))))))).))))................ ( -29.40)
>DroPse_CAF1 33685 102 + 1
--------UCUUGCUGUUUUUGAAGUUACUUAGUUUGCAUAAUGGCUUCCUCAGCUGGCUGU-------UGGCUGUAGCCAAGUGCAAUCGAUAAAUGCUAAUAAAACUGACACACA
--------...(((.(((((...(((......(.((((((..(((((....((((..(...)-------..)))).))))).)))))).).......)))...))))).).)).... ( -24.32)
>DroSec_CAF1 37665 111 + 1
CAUGGCUGUUUUGCAGC-UCUGCAGUUACUUAGUUUGCACAAUGGCCUC---UGUCGACA--UCGCGGUCGACGUCGUCUAAGUGCAAUCUAUAUAUGCUAAUAAAACUGUCCCACA
...(((((.....))))-)..((((((...(((.((((((...(((..(---.((((((.--.....)))))))..)))...)))))).)))..(((....))).))))))...... ( -32.80)
>DroPer_CAF1 34497 107 + 1
--------UCUUGCUGCUUUUGAAGUUACUUAGUUUGCAUAAUGGCUUCCUCUGCUGGCUGUUGGCUGUUGGCUGUAGCCAAAUGCAAUCGAUAAAUGCUAAUAAAACUAACA--CA
--------....(((((....(((((((.(((.......))))))))))....)).)))((((((((((((..((((......))))..)))))...))))))).........--.. ( -23.90)
>consensus
________UCUUGCAGC_UCUGAAGUUACUUAGUUUGCACAAUGGCCUC___UGCCGACA__UCGCGGUCGACGGCAGCCAAGUGCAAUCGAUAAAUGCUAAUAAAACUGACACACA
.....................((((((..(((((((((((..(((((....((((((((........)))))))).))))).)))))).........)))))...))))))...... (-21.06 = -21.25 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:46 2006