| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 19,829,191 – 19,829,303 |
| Length | 112 |
| Max. P | 0.582066 |
| Location | 19,829,191 – 19,829,303 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.56 |
| Mean single sequence MFE | -25.87 |
| Consensus MFE | -19.47 |
| Energy contribution | -20.50 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 19829191 112 + 22224390 GUGACAUUUAACGGAAAUGAAGAAAAUUUUUCUCAUUUCCUUUGAGUGAGGCGGUAGUGCCCAGGAGCAGCAGGACCA-GAACCAGAACCAUAACCAUAACCAGAACCAGCAC------- ((..(((((((.((((((((.(((.....))))))))))).)))))))..))(((..(((.........)))..))).-..................................------- ( -24.90) >DroSec_CAF1 34859 106 + 1 GUGACAUUUAACGGAAAUGAAGAAAAUUUUUCUCAUUUCCUUUAAGUGAGGCGGUAGUGCCCAGAAGCAGCAGGACCA-GAACCAGAACCAUAAGCAUAAC------CAGCAC------- ....(((((((.((((((((.(((.....))))))))))).)))))))..(((((.((((...(......).((....-...))..........)))).))------).))..------- ( -26.10) >DroSim_CAF1 33206 106 + 1 GUGACAUUUAACGGAAAUGAAGAAAAUUUUUCUCAUUUCCUUUGAGUGAGGCGGUAGUGCCCAGGAGCAGCAGGACCA-GAACCAGAACCAUAACCAUAAC------CAGCAC------- ((..(((((((.((((((((.(((.....))))))))))).)))))))..))(((..(((.........)))..))).-......................------......------- ( -24.90) >DroEre_CAF1 25436 119 + 1 GUGACAUUUAACGGAAAUGAAGAAAAUUUUUCUCAUUUCCUUUGAGUGAGGCGGUAGUGCCCAAGAGCAGCUCGACCA-GAACCAGGACCAGAACCAUAACCAGCAACAGCACCAGCACC (((.(((((((.((((((((.(((.....))))))))))).))))))).((.(((.(((.....(((...)))..((.-......))........))).))).((....)).))..))). ( -28.30) >DroYak_CAF1 25858 95 + 1 GUGACAUUUAACGGAAAUGAAGAAAAUUUUUCUCAUUUCCUUUGAGUGAGGCGGUAGUGCCCAGGAGCAGCAGGACCA-GAACCAGAACCAGAACC------------------------ ((..(((((((.((((((((.(((.....))))))))))).)))))))..))(((..(((.........)))..))).-.................------------------------ ( -24.90) >DroPer_CAF1 30897 92 + 1 GUGACAUUUAACGGAAAUGAAGAAAAUUUUUCUCAUUUCCUUUGAGUGAGCCUG---------------GCCGGACCAAGAGCCAGCAACAUGA------GAAGUAGCUGUGG------- (((.(((((((.((((((((.(((.....))))))))))).))))))).((.((---------------(((.......).))))))..)))..------.............------- ( -26.10) >consensus GUGACAUUUAACGGAAAUGAAGAAAAUUUUUCUCAUUUCCUUUGAGUGAGGCGGUAGUGCCCAGGAGCAGCAGGACCA_GAACCAGAACCAUAACCAUAAC______CAGCAC_______ ((..(((((((.((((((((.(((.....))))))))))).)))))))..))(((..(((.........)))..)))........................................... (-19.47 = -20.50 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:45 2006