Locus 7954

Sequence ID X_DroMel_CAF1
Location 19,829,026 – 19,829,130
Length 104
Max. P 0.625251
window13056

overview

Window 6

Location 19,829,026 – 19,829,130
Length 104
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 90.35
Mean single sequence MFE -28.84
Consensus MFE -21.38
Energy contribution -21.74
Covariance contribution 0.36
Combinations/Pair 1.16
Mean z-score -1.76
Structure conservation index 0.74
SVM decision value 0.19
SVM RNA-class probability 0.625251
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19829026 104 + 22224390
AAAUUCUUUUGCCGUUUGAAUAAACUUGGA-UCCUCG-UUCGAGGGGAUAGCAAUAGUUUCGGUGUUGAUCCUGGACUUGGCAAAGGUCCAGCACUCACCUUUAAA
.....((.((((.((((....))))....(-(((((.-.....)))))).)))).))....((((......((((((((.....))))))))....))))...... ( -28.90)
>DroSec_CAF1 34696 102 + 1
AAAUUCGUUUGCACUUUGAAUAAACUUGGA-UCCUCG-UUCGAGGGAAUAGCAAUACUUUCGGUGUUGAUCCUGGACUUGGCAAAGGUCCAGCACUCACCUUUA--
......((((((..((..(......)..))-(((((.-...)))))....)))).))....((((......((((((((.....))))))))....))))....-- ( -27.20)
>DroSim_CAF1 33043 102 + 1
AAAUUCGUUUGCAGUUUGAAUAAACUUAGA-UCCUCG-UUCGAGGGAUUAGCAAUACUUUCGGUGUUGAUCCUGGACUUGGCAAAGGUCCAGCACUCACCUUUA--
......(((((((((((....)))))(((.-(((((.-...))))).))))))).))....((((......((((((((.....))))))))....))))....-- ( -28.40)
>DroEre_CAF1 25274 102 + 1
AAAUUCGCUUGCAGUUUAAAUAAACUUGGA-UCCUCG-UUCCAGAGGAUAGUAAUACUUUCGGUGUGGAUCCUGGACUUGGCAAAGGUCCAGCACUCACCUUUA--
........(((((((((....)))))...(-(((((.-.....)))))).)))).......((((.(....((((((((.....))))))))..).))))....-- ( -29.60)
>DroYak_CAF1 25694 104 + 1
AAAUUCGUUUGCCGUUUAAGCAAACUUGGAAUUCCCGUUUUGAGGGGAUAGUAAUACUUUCGGUGUUGAUCCCGGACUUGGCAAAGGUCCAGCACUCACCUUUA--
......((((((.......))))))..((.....))....(((((((((..((((((.....)))))))))))((((((.....))))))....))))......-- ( -30.10)
>consensus
AAAUUCGUUUGCAGUUUGAAUAAACUUGGA_UCCUCG_UUCGAGGGGAUAGCAAUACUUUCGGUGUUGAUCCUGGACUUGGCAAAGGUCCAGCACUCACCUUUA__
........((((.((((....))))......(((((.......)))))..)))).......((((......((((((((.....))))))))....))))...... (-21.38 = -21.74 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:44 2006