Locus 7952

Sequence ID X_DroMel_CAF1
Location 19,826,876 – 19,826,968
Length 92
Max. P 0.965719
window13050

overview

Window 0

Location 19,826,876 – 19,826,968
Length 92
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 79.87
Mean single sequence MFE -39.70
Consensus MFE -26.39
Energy contribution -26.45
Covariance contribution 0.06
Combinations/Pair 1.12
Mean z-score -2.32
Structure conservation index 0.66
SVM decision value 1.58
SVM RNA-class probability 0.965719
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 19826876 92 - 22224390
------GG------------GCCGUGGCCUUGGGAAUGGGAAUGGGCGGAGUGGGCUGUGCUCAUAAAUUGGCGCAACGUCCCGACAGAGUGCCAAAAAUGGCGCGAAUC---
------((------------((....))))......(((((.((.((.((((((((...))))))...)).)).))...))))).....((((((....)))))).....--- ( -33.10)
>DroSec_CAF1 32628 89 - 1
------GG------------GGCGUGGCCUUGGGA------AUGGGCGGAGUGGGCUGUGCUCAUAAAUUGGCGCGACGUCCCGCCAGAGUGCCAAAAAUGGCGCGAAUCCAG
------((------------(((((.((.(..(..------(((((((.((....)).)))))))...)..).)).)))))))......((((((....))))))........ ( -40.50)
>DroSim_CAF1 30795 89 - 1
------GG------------GGCGUGGCCUUGGGA------AUGGGCGGAGUGGGCUGUGCUCAUAAAUUGGCGCGACGUCCCGACAGAGUGCCAAAAAUGGCGCGAAUCCAG
------((------------(((((.((.(..(..------(((((((.((....)).)))))))...)..).)).)))))))......((((((....))))))........ ( -40.50)
>DroEre_CAF1 22877 107 - 1
GGGAGGGGCGGGAGGCGGUAGGCGGUGCCUUGGGA------AUGGAUGAAGCGGGAUGUGCUCAUAAAUUGGCGCGCCGCCCCAACAGAGUGCCAAAAAUGGCGCGAAUCCUG
(((((((((((...((.....)).(((((.....(------((..((((.(((.....)))))))..)))))))).)))))))......((((((....))))))...)))). ( -44.70)
>consensus
______GG____________GGCGUGGCCUUGGGA______AUGGGCGGAGUGGGCUGUGCUCAUAAAUUGGCGCGACGUCCCGACAGAGUGCCAAAAAUGGCGCGAAUCCAG
....................(((((.((.(..(........(((((((.((....)).)))))))...)..).)).)))))........((((((....))))))........ (-26.39 = -26.45 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:38 2006